Package: hapmapsnp6

Version: 1.28.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:hapmapsnp6.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings hapmapsnp6_1.28.0.tar.gz

StartedAt: 2020-04-14 12:57:58 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 13:00:09 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 130.7 seconds

RetCode: 0

Status:  OK

CheckDir: hapmapsnp6.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:hapmapsnp6.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings hapmapsnp6_1.28.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/hapmapsnp6.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hapmapsnp6/DESCRIPTION’ ... OK
* this is package ‘hapmapsnp6’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hapmapsnp6’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 380.9Mb
  sub-directories of 1Mb or more:
    celFiles  197.6Mb
    data      183.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
crlmmResult 20.504   0.34  20.853
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/hapmapsnp6.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL hapmapsnp6
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘hapmapsnp6’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hapmapsnp6)

name	user	system	elapsed
crlmmResult	20.504	0.340	20.853
hapmapsnp6-package	0	0	0