Package: BloodCancerMultiOmics2017

Version: 1.6.4

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:BloodCancerMultiOmics2017.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings BloodCancerMultiOmics2017_1.6.4.tar.gz

StartedAt: 2020-04-14 13:48:26 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 13:51:21 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 175.4 seconds

RetCode: 0

Status:  OK

CheckDir: BloodCancerMultiOmics2017.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:BloodCancerMultiOmics2017.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings BloodCancerMultiOmics2017_1.6.4.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.10-data-experiment/meat/BloodCancerMultiOmics2017.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BloodCancerMultiOmics2017/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BloodCancerMultiOmics2017’ version ‘1.6.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BloodCancerMultiOmics2017’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 75.3Mb
  sub-directories of 1Mb or more:
    data     66.5Mb
    extdata   8.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.10-data-experiment/meat/BloodCancerMultiOmics2017.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL BloodCancerMultiOmics2017
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘BloodCancerMultiOmics2017’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BloodCancerMultiOmics2017)

name	user	system	elapsed
addNrisk	0.052	0.004	0.126
col2hex	0.000	0.000	0.001
deckel	0	0	0
exp10div	0	0	0
giveDrugLabel	0.004	0.000	0.004
log10div	0	0	0
meltWholeDF	0.016	0.000	0.017
moround	0	0	0
nrisk	0.02	0.00	0.03
percentAxisScale	0	0	0
pheatmapwh	1.500	0.012	1.576
safeMatch	0.000	0.000	0.001
scientific_10	0	0	0
smunlist	0	0	0
stripConc	0.000	0.000	0.001
survplot	0.072	0.008	0.078
toCaps	0	0	0
whichInGrob	0.096	0.000	0.095