Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:20:43 -0400 (Wed, 15 Apr 2020).
Package 1468/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
rols 2.14.0 Laurent Gatto
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: rols |
Version: 2.14.0 |
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rols.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings rols_2.14.0.tar.gz |
StartedAt: 2020-04-15 06:15:28 -0400 (Wed, 15 Apr 2020) |
EndedAt: 2020-04-15 06:32:30 -0400 (Wed, 15 Apr 2020) |
EllapsedTime: 1022.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: rols.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rols.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings rols_2.14.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/rols.Rcheck' * using R version 3.6.3 (2020-02-29) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'rols/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'rols' version '2.14.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'rols' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU or elapsed time > 5s user system elapsed Term-class 91.41 2.33 215.39 CVParam-class 0.67 0.03 17.36 Ontology-class 0.61 0.03 7.58 OlsSearch-class 0.30 0.02 6.74 ** running examples for arch 'x64' ... OK Examples with CPU or elapsed time > 5s user system elapsed Term-class 78.94 1.44 186.79 CVParam-class 0.88 0.06 18.28 Ontology-class 0.46 0.01 5.91 OlsSearch-class 0.30 0.02 6.81 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
rols.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/rols_2.14.0.tar.gz && rm -rf rols.buildbin-libdir && mkdir rols.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rols.buildbin-libdir rols_2.14.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL rols_2.14.0.zip && rm rols_2.14.0.tar.gz rols_2.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 30540 100 30540 0 0 907k 0 --:--:-- --:--:-- --:--:-- 1028k install for i386 * installing *source* package 'rols' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'lapply' from package 'base' in package 'rols' ** help *** installing help indices converting help for package 'rols' finding HTML links ... done CVParam-class html finding level-2 HTML links ... done OlsSearch-class html Ontology-class html Properties-class html Term-class html dot-properties html dot-term html dot-terms html makeOntologies html makeOntology html makeProperty html makeTerm html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'rols' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'rols' as rols_2.14.0.zip * DONE (rols) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'rols' successfully unpacked and MD5 sums checked
rols.Rcheck/tests_i386/testthat.Rout R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # setting R_TESTS to empty string because of > # https://github.com/hadley/testthat/issues/144 > # revert this when that issue in R is fixed. > Sys.setenv("R_TESTS" = "") > library("testthat") > library("rols") This is 'rols' version 2.14.0 > > test_check("rols") [, , Hello, World] Object of class 'OlsSearch': ontolgy: GO query: cell requested: 20 (out of 9918) response(s): 0 Object of class 'Ontologies' with 248 entries AERO, ARO ... ZECO, ZFA Object of class 'Ontologies' with 1 entries AERO Object of class 'Ontologies' with 2 entries AERO, ARO Object of class 'Ontologies' with 3 entries AERO, ARO, CMO Object of class 'Ontologies' with 4 entries AERO, ARO, CMO, DDPHENO Object of class 'Ontologies' with 5 entries AERO, ARO ... DDPHENO, DICOM Ontology: Gene Ontology (go) An ontology for describing the function of genes and gene products Loaded: 2020-04-10 Updated: 2020-04-10 Version: 2020-03-23 50216 terms 61 properties 0 individuals Object of class 'Properties' with 92 entries From the SO ontology partial_evidence_for_feature, evidence_for_feature ... variant_of, DBVAR Object of class 'Properties' with 112 entries From the UBERON ontology digestive system gland, abdomen element ... liver lobule, bile A Property from the UBERON ontology: UBERON:0006925 Label: digestive system gland Object of class 'Terms' with 2581 entries From the SO ontology SO:0000579, SO:0000833 ... SO:0000071, SO:0000070 Object of class 'Terms' with 1 entries From the SO ontology SO:0000579 Object of class 'Terms' with 2 entries From the SO ontology SO:0000579, SO:0000833 Object of class 'Terms' with 3 entries From the SO ontology SO:0000579, SO:0000833, SO:0000578 Object of class 'Terms' with 4 entries From the SO ontology SO:0000579, SO:0000833, SO:0000578, SO:0000011 Object of class 'Terms' with 5 entries From the SO ontology SO:0000579, SO:0000833 ... SO:0000011, SO:0001430 A Term from the GO ontology: GO:0032801 Label: receptor catabolic process The chemical reactions and pathways resulting in the breakdown of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. Testing term SO:0001144 Testing term SO:0000124 Testing term SO:0000432 Testing term SO:0001688 Testing term SO:0001213 Testing term SO:0000382 Testing term SO:0000579 Testing term SO:0001668 Testing term SO:0001820 Testing term SO:0000445 == testthat results =========================================================== [ OK: 2777 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 0 ] > > proc.time() user system elapsed 73.35 0.87 245.29 |
rols.Rcheck/tests_x64/testthat.Rout R version 3.6.3 (2020-02-29) -- "Holding the Windsock" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # setting R_TESTS to empty string because of > # https://github.com/hadley/testthat/issues/144 > # revert this when that issue in R is fixed. > Sys.setenv("R_TESTS" = "") > library("testthat") > library("rols") This is 'rols' version 2.14.0 > > test_check("rols") [, , Hello, World] Object of class 'OlsSearch': ontolgy: GO query: cell requested: 20 (out of 9918) response(s): 0 Object of class 'Ontologies' with 248 entries AERO, ARO ... ZECO, ZFA Object of class 'Ontologies' with 1 entries AERO Object of class 'Ontologies' with 2 entries AERO, ARO Object of class 'Ontologies' with 3 entries AERO, ARO, CMO Object of class 'Ontologies' with 4 entries AERO, ARO, CMO, DDPHENO Object of class 'Ontologies' with 5 entries AERO, ARO ... DDPHENO, DICOM Ontology: Gene Ontology (go) An ontology for describing the function of genes and gene products Loaded: 2020-04-10 Updated: 2020-04-10 Version: 2020-03-23 50216 terms 61 properties 0 individuals Object of class 'Properties' with 92 entries From the SO ontology partial_evidence_for_feature, evidence_for_feature ... variant_of, DBVAR Object of class 'Properties' with 112 entries From the UBERON ontology digestive system gland, abdomen element ... bile, liver lobule A Property from the UBERON ontology: UBERON:0006925 Label: digestive system gland Object of class 'Terms' with 2581 entries From the SO ontology SO:0000579, SO:0000833 ... SO:0000071, SO:0000070 Object of class 'Terms' with 1 entries From the SO ontology SO:0000579 Object of class 'Terms' with 2 entries From the SO ontology SO:0000579, SO:0000833 Object of class 'Terms' with 3 entries From the SO ontology SO:0000579, SO:0000833, SO:0000578 Object of class 'Terms' with 4 entries From the SO ontology SO:0000579, SO:0000833, SO:0000578, SO:0000011 Object of class 'Terms' with 5 entries From the SO ontology SO:0000579, SO:0000833 ... SO:0000011, SO:0001430 A Term from the GO ontology: GO:0032801 Label: receptor catabolic process The chemical reactions and pathways resulting in the breakdown of a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. Testing term SO:0000853 Testing term SO:0000934 Testing term SO:0001654 Testing term SO:0000097 Testing term SO:0002065 Testing term SO:0001929 Testing term SO:0000006 Testing term SO:0002078 Testing term SO:0002119 Testing term SO:0001553 == testthat results =========================================================== [ OK: 2777 | SKIPPED: 0 | WARNINGS: 1 | FAILED: 0 ] > > proc.time() user system elapsed 85.67 0.78 257.90 |
rols.Rcheck/examples_i386/rols-Ex.timings
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rols.Rcheck/examples_x64/rols-Ex.timings
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