Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:26:58 -0400 (Wed, 15 Apr 2020).
Package 942/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
maftools 2.2.10 Anand Mayakonda
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: maftools |
Version: 2.2.10 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/maftools_2.2.10.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_2.2.10.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL maftools_2.2.10.zip && rm maftools_2.2.10.tar.gz maftools_2.2.10.zip |
StartedAt: 2020-04-14 18:54:15 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 18:55:09 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 53.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/maftools_2.2.10.tar.gz && rm -rf maftools.buildbin-libdir && mkdir maftools.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=maftools.buildbin-libdir maftools_2.2.10.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL maftools_2.2.10.zip && rm maftools_2.2.10.tar.gz maftools_2.2.10.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 6547k 100 6547k 0 0 45.6M 0 --:--:-- --:--:-- --:--:-- 47.0M install for i386 * installing *source* package 'maftools' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'maftools' finding HTML links ... done GISTIC-class html MAF-class html OncogenicPathways html PlotOncogenicPathways html annovarToMaf html clinicalEnrichment html coOncoplot html compareSignatures html drugInteractions html estimateSignatures html extractSignatures html forestPlot html geneCloud html finding level-2 HTML links ... done genesToBarcodes html genotypeMatrix html getClinicalData html getCytobandSummary html getFields html getGeneSummary html getSampleSummary html gisticBubblePlot html gisticChromPlot html gisticOncoPlot html icgcSimpleMutationToMAF html inferHeterogeneity html lollipopPlot html lollipopPlot2 html mafCompare html mafSummary html mafSurvGroup html mafSurvival html math.score html merge_mafs html mutCountMatrix html oncodrive html oncoplot html oncostrip html pancanComparison html pfamDomains html plotApobecDiff html plotCBSsegments html plotClusters html plotCophenetic html plotEnrichmentResults html plotOncodrive html plotSignatures html plotTiTv html plotVaf html plotmafSummary html prepareMutSig html rainfallPlot html read.maf html readGistic html signatureEnrichment html somaticInteractions html subsetMaf html survGroup html tcgaCompare html titv html trinucleotideMatrix html write.GisticSummary html write.mafSummary html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'maftools' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'maftools' as maftools_2.2.10.zip * DONE (maftools) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'maftools' successfully unpacked and MD5 sums checked