Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2019-12-20 12:30:47 -0500 (Fri, 20 Dec 2019).
Package 1514/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SANTA 2.24.0 Alex J. Cornish
| malbec1 | Linux (Ubuntu 18.04.3 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] |
Package: SANTA |
Version: 2.24.0 |
Command: rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SANTA_2.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SANTA.buildbin-libdir |
StartedAt: 2019-12-20 08:46:40 -0500 (Fri, 20 Dec 2019) |
EndedAt: 2019-12-20 08:47:30 -0500 (Fri, 20 Dec 2019) |
EllapsedTime: 49.8 seconds |
RetCode: 0 |
Status: OK |
PackageFile: SANTA_2.24.0.tgz |
PackageFileSize: 3.698 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SANTA.buildbin-libdir && mkdir SANTA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh SANTA_2.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R SANTA.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=SANTA.buildbin-libdir SANTA_2.24.0.tar.gz' >>>>>>> * installing *source* package ‘SANTA’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c computenetK_fewzeros.c -o computenetK_fewzeros.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c computenetK_manyzeros.c -o computenetK_manyzeros.o computenetK_manyzeros.c:29:24: warning: incompatible pointer types assigning to 'int *' from 'char *' [-Wincompatible-pointer-types] p_which_vw_nonzero = R_alloc(n_nonzero_vertices, sizeof(int)); ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 warning generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c computenodeAUK.c -o computenodeAUK.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c computeweights.c -o computeweights.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o SANTA.so computenetK_fewzeros.o computenetK_manyzeros.o computenodeAUK.o computeweights.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.10-bioc/meat/SANTA.buildbin-libdir/00LOCK-SANTA/00new/SANTA/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SANTA) >>>>>>> >>>>>>> FIXING LINKS FOR SANTA.buildbin-libdir/SANTA/libs//SANTA.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "SANTA.buildbin-libdir/SANTA/libs//SANTA.so"