J. Zhang
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/tkWidgets |
| Branch: RELEASE_3_10 |
| Last Commit: b052f74 |
| Last Changed Date: 2019-10-29 13:07:21 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:16:38 -0400 (Wed, 15 Apr 2020).
| Package 1729/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| tkWidgets 1.64.0 J. Zhang
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: tkWidgets |
| Version: 1.64.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:tkWidgets.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings tkWidgets_1.64.0.tar.gz |
| StartedAt: 2020-04-15 07:06:15 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 07:07:16 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 60.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: tkWidgets.Rcheck |
| Warnings: 0 |
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### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:tkWidgets.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings tkWidgets_1.64.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/tkWidgets.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'tkWidgets/DESCRIPTION' ... OK
* this is package 'tkWidgets' version '1.64.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'tkWidgets' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
'DynDoc' 'methods' 'tools' 'widgetTools'
Please remove these calls from your code.
'library' or 'require' call to 'Biobase' in package code.
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
'DynDoc' 'methods' 'tools' 'widgetTools'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
print.Widget print.pWidget
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'tkWidgets/R/zzz.R':
.onLoad calls:
require("methods", quietly = TRUE)
require("widgetTools", quietly = TRUE)
require("DynDoc", quietly = TRUE)
require(Biobase)
Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.
.getPackNames: warning in .packages(all = TRUE): partial argument match
of 'all' to 'all.available'
.popPackList: warning in .packages(all = TRUE): partial argument match
of 'all' to 'all.available'
assignArgs: warning in assign("argsList", value, env = env): partial
argument match of 'env' to 'envir'
assignLineData: warning in assign("lineData", lineData, env = env):
partial argument match of 'env' to 'envir'
eExplorer : export: warning in assign(i, temp[[i]], env = .GlobalEnv):
partial argument match of 'env' to 'envir'
fileWizard : view: warning in read.table(file = args$file, head =
args$header, sep = args$sep, as.is = TRUE): partial argument match of
'head' to 'header'
fileWizard : finish: warning in read.table(file = args$file, head =
args$header, sep = args$sep, as.is = TRUE): partial argument match of
'head' to 'header'
finish: warning in assign(dataName, dataFile, env = .GlobalEnv):
partial argument match of 'env' to 'envir'
getRowNames: warning in read.table(file.name, sep = sep, nrow = 3,
header = header, skip = skip): partial argument match of 'nrow' to
'nrows'
objNameToList: warning in get(objNames[i], env = env): partial argument
match of 'env' to 'envir'
objectBrowser : viewEnv: warning in ls(env = env, all = TRUE): partial
argument match of 'env' to 'envir'
objectBrowser : viewEnv: warning in ls(env = env, all = TRUE): partial
argument match of 'all' to 'all.names'
objectBrowser : doEnv: warning in ls(env = get(item)): partial argument
match of 'env' to 'envir'
objectBrowser : up: warning in ls(env = get(selectedObj)): partial
argument match of 'env' to 'envir'
viewVignette : export: warning in assign(i, temp[[i]], env =
.GlobalEnv): partial argument match of 'env' to 'envir'
fileWizard : brows: no visible global function definition for 'tkcmd'
objNameToList: no visible global function definition for
'package.contents'
vExplorer : write2VigList: no visible global function definition for
'pkgVignettes'
Undefined global functions or variables:
package.contents pkgVignettes tkcmd
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/tkWidgets.Rcheck/00check.log'
for details.
tkWidgets.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/tkWidgets_1.64.0.tar.gz && rm -rf tkWidgets.buildbin-libdir && mkdir tkWidgets.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=tkWidgets.buildbin-libdir tkWidgets_1.64.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL tkWidgets_1.64.0.zip && rm tkWidgets_1.64.0.tar.gz tkWidgets_1.64.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 182k 100 182k 0 0 4204k 0 --:--:-- --:--:-- --:--:-- 4686k
install for i386
* installing *source* package 'tkWidgets' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'tkWidgets'
finding HTML links ... done
DPExplorer html
WName html
appendSepDir html
args2XML html
argsWidget html
colInfo-class html
dataViewer html
dbArgsWidget html
eExplorer html
fileBrowser html
fileWizard html
getLightTW html
getWvalues html
guess.sep html
hasChar html
importPhenoData html
importWizard html
listSelect html
objNameToList html
objViewer html
objectBrowser html
pExplorer html
pickFiles html
pickItems html
pickObjs html
setArgsList html
stdType html
tkMIAME html
tkSampleNames html
tkphenoData html
vExplorer html
values.Widget html
widgetRender html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'tkWidgets' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'tkWidgets' as tkWidgets_1.64.0.zip
* DONE (tkWidgets)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'tkWidgets' successfully unpacked and MD5 sums checked
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tkWidgets.Rcheck/examples_i386/tkWidgets-Ex.timings
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tkWidgets.Rcheck/examples_x64/tkWidgets-Ex.timings
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