Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:29:07 -0400 (Wed, 15 Apr 2020).
Package 1532/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
scfind 1.8.0 Vladimir Kiselev
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | ERROR | skipped | skipped | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | ERROR | skipped | skipped |
Package: scfind |
Version: 1.8.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/scfind_1.8.0.tar.gz && rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scfind.buildbin-libdir scfind_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL scfind_1.8.0.zip && rm scfind_1.8.0.tar.gz scfind_1.8.0.zip |
StartedAt: 2020-04-14 19:39:35 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 19:40:46 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 71.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/scfind_1.8.0.tar.gz && rm -rf scfind.buildbin-libdir && mkdir scfind.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scfind.buildbin-libdir scfind_1.8.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL scfind_1.8.0.zip && rm scfind_1.8.0.tar.gz scfind_1.8.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 1613k 100 1613k 0 0 26.9M 0 --:--:-- --:--:-- --:--:-- 28.6M install for i386 * installing *source* package 'scfind' ... ** using staged installation ** libs C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c eliasFano.cpp -o eliasFano.o eliasFano.cpp: In function 'std::vector<bool> int2bin(int)': eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable] int rem; ^ eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)': eliasFano.cpp:83:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int k = 0; k < h.size(); k++) { ^ C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/scfind.buildbin-libdir/00LOCK-scfind/00new/scfind/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'scfind' finding HTML links ... done ann html buildCellIndex html buildCellTypeIndex html findCell html findCellType html yan html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'scfind' ... ** libs C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c eliasFano.cpp -o eliasFano.o eliasFano.cpp: In function 'std::vector<bool> int2bin(int)': eliasFano.cpp:8:9: warning: unused variable 'rem' [-Wunused-variable] int rem; ^ eliasFano.cpp: In function 'Rcpp::NumericVector eliasFanoDecoding(Rcpp::LogicalVector, Rcpp::LogicalVector, int)': eliasFano.cpp:83:31: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (int k = 0; k < h.size(); k++) { ^ C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o scfind.dll tmp.def RcppExports.o eliasFano.o -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/scfind.buildbin-libdir/scfind/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'scfind' as scfind_1.8.0.zip * DONE (scfind) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'scfind' successfully unpacked and MD5 sums checked