Michael Lawrence
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/rsbml |
| Branch: RELEASE_3_10 |
| Last Commit: 6e45be1 |
| Last Changed Date: 2019-10-29 13:07:53 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:18:11 -0400 (Wed, 15 Apr 2020).
| Package 1482/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| rsbml 2.44.0 Michael Lawrence
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: rsbml |
| Version: 2.44.0 |
| Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rsbml.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings rsbml_2.44.0.tar.gz |
| StartedAt: 2020-04-15 06:17:52 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 06:22:04 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 252.4 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: rsbml.Rcheck |
| Warnings: 2 |
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###
### Running command:
###
### C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:rsbml.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings rsbml_2.44.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rsbml/DESCRIPTION' ... OK
* this is package 'rsbml' version '2.44.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'rsbml' can be installed ... WARNING
Found the following significant warnings:
Warning: multiple methods tables found for 'type'
Warning: multiple methods tables found for 'type<-'
See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
installed size is 23.9Mb
sub-directories of 1Mb or more:
SBML_odeSolver-1.7.0beta 1.6Mb
libs 20.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'BiocGenerics' 'utils'
A package should be listed in only one of these fields.
* checking top-level files ... NOTE
Found a 'configure.in' file: 'configure.ac' has long been preferred.
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: multiple methods tables found for 'type'
Warning: multiple methods tables found for 'type<-'
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... NOTE
Warning: multiple methods tables found for 'type'
Warning: multiple methods tables found for 'type<-'
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'utils'
All declared Imports should be used.
Package in Depends field not imported from: 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: 'graph:::listLen'
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
as.character.SBML as.character.SBMLDocument
See section 'Registering S3 methods' in the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.simulate.SBML: no visible global function definition for 'tail'
.simulate.SBML: no visible global function definition for 'new'
.simulate.SBML: no visible global function definition for 'is'
.simulate.SBML : <anonymous>: no visible global function definition for
'head'
.simulate.SBML: no visible global function definition for 'slotNames'
.simulate.SBML: no visible binding for global variable 'new'
as.ts,SOSResult: no visible global function definition for 'ts'
coerce,SBMLProblems-character: no visible binding for global variable
'as'
describe,CompartmentGlyph: no visible global function definition for
'callNextMethod'
describe,CubicBezier: no visible global function definition for
'callNextMethod'
describe,ReactionGlyph: no visible global function definition for
'callNextMethod'
describe,SpeciesGlyph: no visible global function definition for
'callNextMethod'
describe,SpeciesReference: no visible global function definition for
'callNextMethod'
describe,SpeciesReferenceGlyph: no visible global function definition
for 'callNextMethod'
describe,TextGlyph: no visible global function definition for
'callNextMethod'
end<-,LineSegment: no visible binding for global variable 'object'
glyphCurve<-,ReactionGlyph: no visible global function definition for
'new'
glyphCurve<-,SpeciesReferenceGlyph: no visible global function
definition for 'new'
kineticLaw<-,Reaction: no visible global function definition for 'new'
rsbml_graph,Model: no visible global function definition for 'new'
rsbml_problems,SBMLDocument : makeProblems : <anonymous>: no visible
binding for global variable 'new'
rsbml_problems,SBMLDocument: no visible binding for global variable
'new'
show,SBMLProblem: no visible global function definition for 'as'
simulate,SBMLDocument: no visible global function definition for 'tail'
simulate,SBMLDocument: no visible global function definition for 'new'
simulate,SBMLDocument: no visible global function definition for 'is'
simulate,SBMLDocument : <anonymous>: no visible global function
definition for 'head'
simulate,SBMLDocument: no visible global function definition for
'slotNames'
simulate,SBMLDocument: no visible binding for global variable 'new'
simulate,SOSExperiment: no visible global function definition for
'slotNames'
simulate,SOSExperiment : <anonymous>: no visible global function
definition for 'slot'
Undefined global functions or variables:
as callNextMethod head is new object slot slotNames tail ts
Consider adding
importFrom("methods", "as", "callNextMethod", "is", "new", "slot",
"slotNames")
importFrom("stats", "ts")
importFrom("utils", "head", "tail")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
'asMath'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking include directives in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for i386 is not available
Note: information on .o files for x64 is not available
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/i386/bzip2.dll':
Found '_assert', possibly from 'assert' (C)
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/x64/rsbml.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/i386/iconv.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/x64/rsbml.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/i386/libxml2.dll':
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/x64/rsbml.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/i386/rsbml.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
File 'C:/Users/biocbuild/bbs-3.10-bioc/R/library/rsbml/libs/x64/rsbml.dll':
Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
Found 'printf', possibly from 'printf' (C)
Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs. The detected symbols are linked into the code but
might come from libraries and not actually be called.
See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 WARNINGs, 9 NOTEs
See
'C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.Rcheck/00check.log'
for details.
rsbml.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/rsbml_2.44.0.tar.gz && rm -rf rsbml.buildbin-libdir && mkdir rsbml.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=rsbml.buildbin-libdir rsbml_2.44.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL rsbml_2.44.0.zip && rm rsbml_2.44.0.tar.gz rsbml_2.44.0.zip
###
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 444k 100 444k 0 0 10.3M 0 --:--:-- --:--:-- --:--:-- 11.4M
install for i386
* installing *source* package 'rsbml' ...
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c StringMap.c -o StringMap.o
In file included from C:/libsbml/i386/include/sbml/common/common.h:111:0,
from StringMap.c:52:
C:/libsbml/i386/include/sbml/util/util.h:343:7: warning: 'finite' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
int finite (double d);
^
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c check.c -o check.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c doc.c -o doc.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c dom.c -o dom.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c graph.c -o graph.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c io.c -o io.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c layoutWrappers.cpp -o layoutWrappers.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mathml.c -o mathml.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/i386/include -IC:/libsbml/i386/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c simulate.c -o simulate.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -LC:/libsbml/i386/bin -lsbml -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
mkdir -p C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.buildbin-libdir/00LOCK-rsbml/00new/rsbml/libs/i386
cp C:/libsbml/i386/bin/*.dll C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.buildbin-libdir/00LOCK-rsbml/00new/rsbml/libs//i386
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.buildbin-libdir/00LOCK-rsbml/00new/rsbml/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'type' in package 'rsbml'
Creating a new generic function for 'type<-' in package 'rsbml'
** help
*** installing help indices
converting help for package 'rsbml'
finding HTML links ... done
AlgebraicRule-class html
AssignmentRule-class html
BoundingBox-class html
CVTerm-class html
Compartment-class html
CompartmentGlyph-class html
CompartmentType-class html
CompartmentVolumeRule-class html
Constraint-class html
CubicBezier-class html
Curve-class html
Delay-class html
Describable-class html
Dimensions-class html
Event-class html
EventAssignment-class html
Experiment-class html
FunctionDefinition-class html
GraphicalObject-class html
InitialAssignment-class html
KineticLaw-class html
Layout-class html
LineSegment-class html
Model-class html
ModelCreator-class html
ModelHistory-class html
ModifierSpeciesReference-class html
Parameter-class html
ParameterRule-class html
Point-class html
RateRule-class html
Reaction-class html
ReactionGlyph-class html
Rule-class html
SBML-class html
SBMLDocument-class html
SBMLProblem-class html
SBMLProblems-class html
SBase-class html
SOSDesign-class html
SOSExperiment-class html
SOSProtocol-class html
SOSResult-class html
SOSSubject-class html
SimpleSpeciesReference-class html
Species-class html
SpeciesConcentrationRule-class html
SpeciesGlyph-class html
SpeciesReference-class html
SpeciesReferenceGlyph-class html
SpeciesType-class html
StoichiometryMath-class html
TextGlyph-class html
Trigger-class html
Unit-class html
UnitDefinition-class html
math html
read html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: multiple methods tables found for 'type'
Warning: multiple methods tables found for 'type<-'
** testing if installed package can be loaded from final location
Warning: multiple methods tables found for 'type'
Warning: multiple methods tables found for 'type<-'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'rsbml' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c StringMap.c -o StringMap.o
In file included from C:/libsbml/x64/include/sbml/common/common.h:111:0,
from StringMap.c:52:
C:/libsbml/x64/include/sbml/util/util.h:343:7: warning: 'finite' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
int finite (double d);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c check.c -o check.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c doc.c -o doc.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c dom.c -o dom.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c graph.c -o graph.o
graph.c: In function 'rsbml_build_graph':
graph.c:55:57: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
StringMap_put(id_map, CHAR(STRING_ELT(r_nodes, i)), (void *)i);
^
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c io.c -o io.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c layoutWrappers.cpp -o layoutWrappers.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c mathml.c -o mathml.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -IC:/Users/BIOCBU~1/BBS-3~1.10-/R/include -DLIBSBML3 -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c simulate.c -o simulate.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -LC:/libsbml/x64/bin -lsbml -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
mkdir -p C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/x64
cp C:/libsbml/x64/bin/*.dll C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.buildbin-libdir/rsbml/libs//x64
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/rsbml.buildbin-libdir/rsbml/libs/x64
** testing if installed package can be loaded
Warning: multiple methods tables found for 'type'
Warning: multiple methods tables found for 'type<-'
* MD5 sums
packaged installation of 'rsbml' as rsbml_2.44.0.zip
* DONE (rsbml)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'rsbml' successfully unpacked and MD5 sums checked
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rsbml.Rcheck/examples_i386/rsbml-Ex.timings
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rsbml.Rcheck/examples_x64/rsbml-Ex.timings
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