Package: psichomics

Version: 1.12.1

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL psichomics

StartedAt: 2020-04-14 19:11:07 -0400 (Tue, 14 Apr 2020)

EndedAt: 2020-04-14 19:12:18 -0400 (Tue, 14 Apr 2020)

EllapsedTime: 70.8 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL psichomics
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘psichomics’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.10-bioc/R/include" -DNDEBUG  -I"/home/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I/usr/local/include  -fpic  -g -O2  -Wall -c psiFastCalc.cpp -o psiFastCalc.o
psiFastCalc.cpp: In function ‘Rcpp::NumericMatrix psiFastCalc(const NumericMatrix&, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, int)’:
psiFastCalc.cpp:30:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (size_t col=0; col < mat.ncol(); col++) {
                        ~~~~^~~~~~~~~~~~
psiFastCalc.cpp:31:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (size_t idx=0; idx < incA.length(); idx++) {
                            ~~~~^~~~~~~~~~~~~~~
psiFastCalc.cpp: In function ‘Rcpp::NumericMatrix psiFastCalc2(const NumericMatrix&, const List&, const List&, int)’:
psiFastCalc.cpp:62:28: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
     for (size_t col=0; col < mat.ncol(); col++) {
                        ~~~~^~~~~~~~~~~~
psiFastCalc.cpp:63:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
         for (size_t idx=0; idx < inc.length(); idx++) {
                            ~~~~^~~~~~~~~~~~~~
psiFastCalc.cpp:66:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (size_t k=0; k < incIdx.length(); k++)
                              ~~^~~~~~~~~~~~~~~~~
psiFastCalc.cpp:71:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
             for (size_t k=0; k < excIdx.length(); k++)
                              ~~^~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.10-bioc/R/lib -L/usr/local/lib -o psichomics.so RcppExports.o psiFastCalc.o -L/home/biocbuild/bbs-3.10-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.10-bioc/R/library/00LOCK-psichomics/00new/psichomics/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘psichomics’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (psichomics)