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CHECK report for fCI on tokay1

This page was generated on 2020-04-15 12:25:07 -0400 (Wed, 15 Apr 2020).

Package 563/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fCI 1.16.0
Shaojun Tang
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/fCI
Branch: RELEASE_3_10
Last Commit: 9787078
Last Changed Date: 2019-10-29 13:09:21 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  ERROR  OK [ ERROR ] ERROR 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: fCI
Version: 1.16.0
Command: C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fCI.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings fCI_1.16.0.tar.gz
StartedAt: 2020-04-15 03:08:10 -0400 (Wed, 15 Apr 2020)
EndedAt: 2020-04-15 03:08:22 -0400 (Wed, 15 Apr 2020)
EllapsedTime: 12.2 seconds
RetCode: 1
Status:  ERROR  
CheckDir: fCI.Rcheck
Warnings: NA

Command output

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### Running command:
###
###   C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:fCI.install-out.txt --library=C:\Users\biocbuild\bbs-3.10-bioc\R\library --no-vignettes --timings fCI_1.16.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.10-bioc/meat/fCI.Rcheck'
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fCI/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fCI' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Depends: includes the non-default packages:
  'FNN', 'psych', 'gtools', 'zoo', 'rgl', 'grid', 'VennDiagram'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fCI' can be installed ... ERROR
Installation failed.
See 'C:/Users/biocbuild/bbs-3.10-bioc/meat/fCI.Rcheck/00install.out' for details.
* DONE

Status: 1 ERROR, 1 NOTE
See
  'C:/Users/biocbuild/bbs-3.10-bioc/meat/fCI.Rcheck/00check.log'
for details.


Installation output

fCI.Rcheck/00install.out

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/fCI_1.16.0.tar.gz && rm -rf fCI.buildbin-libdir && mkdir fCI.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=fCI.buildbin-libdir fCI_1.16.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL fCI_1.16.0.zip && rm fCI_1.16.0.tar.gz fCI_1.16.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  888k  100  888k    0     0  16.7M      0 --:--:-- --:--:-- --:--:-- 18.0M

install for i386

* installing *source* package 'fCI' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error: package 'rgl' is not installed for 'arch = i386'
Execution halted
ERROR: lazy loading failed for package 'fCI'
* removing 'C:/Users/biocbuild/bbs-3.10-bioc/meat/fCI.buildbin-libdir/fCI'

Tests output


Example timings