Joshua Campbell
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/celda |
| Branch: RELEASE_3_10 |
| Last Commit: d12778d |
| Last Changed Date: 2020-01-21 21:59:07 -0400 (Tue, 21 Jan 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:32:29 -0400 (Wed, 15 Apr 2020).
| Package 238/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| celda 1.2.4 Joshua Campbell
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: celda |
| Version: 1.2.4 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/celda_1.2.4.tar.gz && rm -rf celda.buildbin-libdir && mkdir celda.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celda.buildbin-libdir celda_1.2.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL celda_1.2.4.zip && rm celda_1.2.4.tar.gz celda_1.2.4.zip |
| StartedAt: 2020-04-14 20:15:54 -0400 (Tue, 14 Apr 2020) |
| EndedAt: 2020-04-14 20:18:31 -0400 (Tue, 14 Apr 2020) |
| EllapsedTime: 156.4 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/celda_1.2.4.tar.gz && rm -rf celda.buildbin-libdir && mkdir celda.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=celda.buildbin-libdir celda_1.2.4.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL celda_1.2.4.zip && rm celda_1.2.4.tar.gz celda_1.2.4.zip
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install for i386
* installing *source* package 'celda' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c cG_calcGibbsProbY.cpp -o cG_calcGibbsProbY.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c eigenMatMultInt.cpp -o eigenMatMultInt.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c matrixNorm.cpp -o matrixNorm.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c matrixSums.c -o matrixSums.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=core2 -c perplexity.c -o perplexity.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o celda.dll tmp.def RcppExports.o cG_calcGibbsProbY.o eigenMatMultInt.o matrixNorm.o matrixSums.o perplexity.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/celda.buildbin-libdir/00LOCK-celda/00new/celda/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'celda'
finding HTML links ... done
appendCeldaList html
availableModels html
bestLogLikelihood-celdaModel-method html
bestLogLikelihood html
celda html
celdaCGGridSearchRes html
celdaCGMod html
celdaCGSim html
celdaCMod html
celdaCSim html
celdaGMod html
celdaGSim html
celdaGridSearch html
celdaHeatmap-celda_C-method html
celdaHeatmap-celda_CG-method html
celdaHeatmap-celda_G-method html
celdaHeatmap html
celdaPerplexity-celdaList-method html
celdaPerplexity html
celdaProbabilityMap-celda_C-method html
celdaProbabilityMap-celda_CG-method html
celdaProbabilityMap html
celdaTsne-celda_C-method html
celdaTsne-celda_CG-method html
celdaTsne-celda_G-method html
celdaTsne html
celdaUmap-celda_C-method html
celdaUmap-celda_CG-method html
celdaUmap-celda_G-method html
celdaUmap html
celda_C html
celda_CG html
celda_G html
clusterProbability-celda_C-method html
clusterProbability-celda_CG-method html
clusterProbability-celda_G-method html
clusterProbability html
clusters-celdaModel-method html
clusters html
compareCountMatrix html
contaminationSim html
countChecksum-celdaList-method html
countChecksum html
decontX html
differentialExpression html
distinctColors html
eigenMatMultInt html
factorizeMatrix-celda_C-method html
factorizeMatrix-celda_CG-method html
factorizeMatrix-celda_G-method html
factorizeMatrix html
fastNormProp html
fastNormPropLog html
fastNormPropSqrt html
featureModuleLookup-celda_C-method html
featureModuleLookup-celda_CG-method html
featureModuleLookup-celda_G-method html
featureModuleLookup html
featureModuleTable html
findMarkers html
geneSetEnrich html
getDecisions html
logLikelihood html
logLikelihoodHistory-celdaModel-method
html
logLikelihoodHistory html
logLikelihoodcelda_C html
logLikelihoodcelda_CG html
logLikelihoodcelda_G html
matrixNames-celdaModel-method html
matrixNames html
moduleHeatmap html
normalizeCounts html
params-celdaModel-method html
params html
perplexity-celda_C-method html
perplexity-celda_CG-method html
perplexity-celda_G-method html
perplexity html
plotDendro html
plotDimReduceCluster html
plotDimReduceFeature html
plotDimReduceGrid html
plotDimReduceModule html
plotGridSearchPerplexity html
plotGridSearchPerplexitycelda_C html
plotGridSearchPerplexitycelda_CG html
plotGridSearchPerplexitycelda_G html
plotHeatmap html
recodeClusterY html
recodeClusterZ html
recursiveSplitCell html
recursiveSplitModule html
resList-celdaList-method html
resList html
resamplePerplexity html
runParams-celdaList-method html
runParams html
sampleCells html
sampleLabel-celdaModel-method html
sampleLabel html
selectBestModel html
semiPheatmap html
simulateCells html
simulateCellscelda_C html
simulateCellscelda_CG html
simulateCellscelda_G html
simulateContaminatedMatrix html
subsetCeldaList html
topRank html
violinPlot html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'celda' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c cG_calcGibbsProbY.cpp -o cG_calcGibbsProbY.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c eigenMatMultInt.cpp -o eigenMatMultInt.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c matrixNorm.cpp -o matrixNorm.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c matrixSums.c -o matrixSums.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppEigen/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c perplexity.c -o perplexity.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o celda.dll tmp.def RcppExports.o cG_calcGibbsProbY.o eigenMatMultInt.o matrixNorm.o matrixSums.o perplexity.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/celda.buildbin-libdir/celda/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'celda' as celda_1.2.4.zip
* DONE (celda)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'celda' successfully unpacked and MD5 sums checked