Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:22:32 -0400 (Wed, 15 Apr 2020).
Package 1630/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SomaticSignatures 2.22.0 Julian Gehring
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: SomaticSignatures |
Version: 2.22.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/SomaticSignatures_2.22.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.22.0.zip && rm SomaticSignatures_2.22.0.tar.gz SomaticSignatures_2.22.0.zip |
StartedAt: 2020-04-14 20:30:55 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 20:32:16 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 81.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/SomaticSignatures_2.22.0.tar.gz && rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SomaticSignatures.buildbin-libdir SomaticSignatures_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.22.0.zip && rm SomaticSignatures_2.22.0.tar.gz SomaticSignatures_2.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 128k 100 128k 0 0 2899k 0 --:--:-- --:--:-- --:--:-- 3211k install for i386 * installing *source* package 'SomaticSignatures' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SomaticSignatures' finding HTML links ... done MutationalSignatures-class html SomaticSignatures-package html cluster-spetrum html decomposition-functions html Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpCis6F9/R.INSTALL16144b277f81/SomaticSignatures/man/decomposition-functions.Rd:75: file link 'NMF' in package 'NMF' does not exist and so has been treated as a topic gc html granges-utils html finding level-2 HTML links ... done hs-chrs html kmers-data html kmers html motif-functions html mutation-context html mutation-distribution html mutational-normalization html mutational-plots html mutational-signatures html mutect html number-signatures html Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpCis6F9/R.INSTALL16144b277f81/SomaticSignatures/man/number-signatures.Rd:98: file link 'evar' in package 'NMF' does not exist and so has been treated as a topic sca-data html signature-plot-functions html signatures21-data html utils html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'SomaticSignatures' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SomaticSignatures' as SomaticSignatures_2.22.0.zip * DONE (SomaticSignatures) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'SomaticSignatures' successfully unpacked and MD5 sums checked