Claudio Isella
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/Mulcom |
| Branch: RELEASE_3_10 |
| Last Commit: 5e6b2f8 |
| Last Changed Date: 2019-10-29 13:08:17 -0400 (Tue, 29 Oct 2019) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:36:30 -0400 (Wed, 15 Apr 2020).
| Package 1110/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Mulcom 1.36.0 Claudio Isella
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
| Package: Mulcom |
| Version: 1.36.0 |
| Command: rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Mulcom_1.36.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Mulcom.buildbin-libdir |
| StartedAt: 2020-04-15 08:08:33 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 08:09:33 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 60.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: Mulcom_1.36.0.tgz |
| PackageFileSize: 1.183 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf Mulcom.buildbin-libdir && mkdir Mulcom.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Mulcom_1.36.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R Mulcom.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Mulcom.buildbin-libdir Mulcom_1.36.0.tar.gz'
>>>>>>>
* installing *source* package ‘Mulcom’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -fPIC -Wall -g -O2 -c mulLibs.cc -o mulLibs.o
mulLibs.cc:708:17: warning: expression result unused [-Wunused-value]
current_cluster ;
^~~~~~~~~~~~~~~
1 warning generated.
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Mulcom.so mulLibs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.10-bioc/meat/Mulcom.buildbin-libdir/00LOCK-Mulcom/00new/Mulcom/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Mulcom)
>>>>>>>
>>>>>>> FIXING LINKS FOR Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgcc_s.1.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libgfortran.3.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.5.2.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libreadline.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libquadmath.0.dylib" "Mulcom.buildbin-libdir/Mulcom/libs//Mulcom.so"