Package: LinkHD

Version: 1.0.0

Command: /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings LinkHD_1.0.0.tar.gz

StartedAt: 2020-04-15 07:00:05 -0400 (Wed, 15 Apr 2020)

EndedAt: 2020-04-15 07:03:45 -0400 (Wed, 15 Apr 2020)

EllapsedTime: 220.3 seconds

RetCode: 0

Status:  OK

CheckDir: LinkHD.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD check --install=check:LinkHD.install-out.txt --library=/home/biocbuild/bbs-3.10-bioc/R/library --no-vignettes --timings LinkHD_1.0.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.10-bioc/meat/LinkHD.Rcheck’
* using R version 3.6.3 (2020-02-29)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘LinkHD/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘LinkHD’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘LinkHD’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
OTU2Taxa-OTU2Taxa 5.324  0.096   5.428
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.10-bioc/R/bin/R CMD INSTALL LinkHD
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* installing to library ‘/home/biocbuild/bbs-3.10-bioc/R/library’
* installing *source* package ‘LinkHD’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LinkHD)

name	user	system	elapsed
Compromise_matrix-methods	1.036	0.048	1.085
DataProcessing	0.008	0.000	0.008
DistStatis-Class	0.000	0.000	0.001
DistStatis-CompromisePlot	0.680	0.008	0.693
DistStatis-CorrelationPlot	0.736	0.000	0.734
DistStatis-GlobalPlot	1.384	0.040	1.427
Euclid_Im-methods	0.656	0.000	0.657
Inertia_RV-methods	0.500	0.000	0.501
Inertia_comp-methods	1.128	0.000	1.129
LinkData-LinkData	0.592	0.000	0.597
OTU2Taxa-OTU2Taxa	5.324	0.096	5.428
RQO-methods	0.608	0.008	0.617
Read_Data	0	0	0
Ruminotypes	0.000	0.000	0.001
Taraoceans	0.000	0.000	0.001
Trajectories-methods	1.148	0.140	1.293
VarSelection-Class	0.000	0.000	0.001
VarSelection	2.904	0.004	2.914
VarTable-methods	3.372	0.000	3.382
Var_coordinates-methods	3.280	0.000	3.295
Variables-methods	3.132	0.008	3.151
compromise_coords-methods	0.420	0.004	0.423
correl-methods	0.360	0.000	0.362
dAB-dAB	1.124	0.000	1.127
sign_values-methods	2.436	0.016	2.462