BiocGenerics 0.32.0
Bioconductor Package Maintainer
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/BiocGenerics |
| Branch: RELEASE_3_10 |
| Last Commit: 22a01ac |
| Last Changed Date: 2019-10-29 13:08:25 -0400 (Tue, 29 Oct 2019) |
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/BiocGenerics_0.32.0.tar.gz && rm -rf BiocGenerics.buildbin-libdir && mkdir BiocGenerics.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=BiocGenerics.buildbin-libdir BiocGenerics_0.32.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL BiocGenerics_0.32.0.zip && rm BiocGenerics_0.32.0.tar.gz BiocGenerics_0.32.0.zip
###
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install for i386
* installing *source* package 'BiocGenerics' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'append' in package 'BiocGenerics'
Creating a new generic function for 'as.data.frame' in package 'BiocGenerics'
Creating a new generic function for 'cbind' in package 'BiocGenerics'
Creating a new generic function for 'rbind' in package 'BiocGenerics'
Creating a new generic function for 'do.call' in package 'BiocGenerics'
Creating a new generic function for 'duplicated' in package 'BiocGenerics'
Creating a new generic function for 'anyDuplicated' in package 'BiocGenerics'
Creating a new generic function for 'eval' in package 'BiocGenerics'
Creating a new generic function for 'pmax' in package 'BiocGenerics'
Creating a new generic function for 'pmin' in package 'BiocGenerics'
Creating a new generic function for 'pmax.int' in package 'BiocGenerics'
Creating a new generic function for 'pmin.int' in package 'BiocGenerics'
Creating a new generic function for 'Reduce' in package 'BiocGenerics'
Creating a new generic function for 'Filter' in package 'BiocGenerics'
Creating a new generic function for 'Find' in package 'BiocGenerics'
Creating a new generic function for 'Map' in package 'BiocGenerics'
Creating a new generic function for 'Position' in package 'BiocGenerics'
Creating a new generic function for 'get' in package 'BiocGenerics'
Creating a new generic function for 'mget' in package 'BiocGenerics'
Creating a new generic function for 'grep' in package 'BiocGenerics'
Creating a new generic function for 'grepl' in package 'BiocGenerics'
Creating a new generic function for 'is.unsorted' in package 'BiocGenerics'
Creating a new generic function for 'lapply' in package 'BiocGenerics'
Creating a new generic function for 'sapply' in package 'BiocGenerics'
Creating a new generic function for 'mapply' in package 'BiocGenerics'
Creating a new generic function for 'match' in package 'BiocGenerics'
Creating a new generic function for 'order' in package 'BiocGenerics'
Creating a new generic function for 'paste' in package 'BiocGenerics'
Creating a new generic function for 'rank' in package 'BiocGenerics'
Creating a new generic function for 'rownames' in package 'BiocGenerics'
Creating a new generic function for 'colnames' in package 'BiocGenerics'
Creating a new generic function for 'union' in package 'BiocGenerics'
Creating a new generic function for 'intersect' in package 'BiocGenerics'
Creating a new generic function for 'setdiff' in package 'BiocGenerics'
Creating a new generic function for 'sort' in package 'BiocGenerics'
Creating a new generic function for 'table' in package 'BiocGenerics'
Creating a new generic function for 'tapply' in package 'BiocGenerics'
Creating a new generic function for 'unique' in package 'BiocGenerics'
Creating a new generic function for 'unsplit' in package 'BiocGenerics'
Creating a new generic function for 'var' in package 'BiocGenerics'
Creating a new generic function for 'sd' in package 'BiocGenerics'
Creating a new generic function for 'which' in package 'BiocGenerics'
Creating a new generic function for 'which.max' in package 'BiocGenerics'
Creating a new generic function for 'which.min' in package 'BiocGenerics'
Creating a new generic function for 'IQR' in package 'BiocGenerics'
Creating a new generic function for 'mad' in package 'BiocGenerics'
Creating a new generic function for 'xtabs' in package 'BiocGenerics'
Creating a new generic function for 'clusterCall' in package 'BiocGenerics'
Creating a new generic function for 'clusterApply' in package 'BiocGenerics'
Creating a new generic function for 'clusterApplyLB' in package 'BiocGenerics'
Creating a new generic function for 'clusterEvalQ' in package 'BiocGenerics'
Creating a new generic function for 'clusterExport' in package 'BiocGenerics'
Creating a new generic function for 'clusterMap' in package 'BiocGenerics'
Creating a new generic function for 'parLapply' in package 'BiocGenerics'
Creating a new generic function for 'parSapply' in package 'BiocGenerics'
Creating a new generic function for 'parApply' in package 'BiocGenerics'
Creating a new generic function for 'parRapply' in package 'BiocGenerics'
Creating a new generic function for 'parCapply' in package 'BiocGenerics'
Creating a new generic function for 'parLapplyLB' in package 'BiocGenerics'
Creating a new generic function for 'parSapplyLB' in package 'BiocGenerics'
Creating a new generic function for 'basename' in package 'BiocGenerics'
Creating a new generic function for 'dirname' in package 'BiocGenerics'
** help
*** installing help indices
converting help for package 'BiocGenerics'
finding HTML links ... done
BiocGenerics-package html
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Extremes html
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IQR html
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Ontology html
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S3-classes-as-S4-classes html
annotation html
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append html
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as.data.frame html
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as.vector html
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boxplot html
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cbind html
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clusterApply html
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colSums html
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combine html
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dbconn html
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density html
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dge html
dims html
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do.call html
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duplicated html
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eval html
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evalq html
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fileName html
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funprog html
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get html
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grep html
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image html
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is.unsorted html
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lapply html
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mad html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/mad.Rd:46: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
mapply html
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match html
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mean html
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normalize html
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nrow html
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order html
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organism_species html
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paste html
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path html
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plotMA html
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plotPCA html
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rank html
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relist html
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rep html
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residuals html
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row_colnames html
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score html
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sets html
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sort html
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start html
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strand html
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subset html
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t html
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table html
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tapply html
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testPackage html
toTable html
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type html
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unique html
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unlist html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unlist.Rd:51: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unlist.Rd:54: file link 'unlist,List-method' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unlist.Rd:56: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic
unsplit html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unsplit.Rd:14: file link 'unsplit' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unsplit.Rd:33: file link 'unsplit' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unsplit.Rd:39: file link 'unsplit' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unsplit.Rd:48: file link 'unsplit' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unsplit.Rd:54: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unsplit.Rd:57: file link 'unsplit,List-method' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/unsplit.Rd:59: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic
updateObject html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/updateObject.Rd:130: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
var html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/var.Rd:14: file link 'var' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/var.Rd:32: file link 'var' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/var.Rd:36: file link 'var' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/var.Rd:45: file link 'var' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/var.Rd:51: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
weights html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/weights.Rd:47: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/weights.Rd:50: file link 'weights,PLMset-method' in package 'affyPLM' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/weights.Rd:52: file link 'PLMset' in package 'affyPLM' does not exist and so has been treated as a topic
which html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/which.Rd:57: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/which.Rd:69: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/which.Rd:72: file link 'which.max,NumericList-method' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/which.Rd:75: file link 'NumericList' in package 'IRanges' does not exist and so has been treated as a topic
xtabs html
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/xtabs.Rd:52: file link 'selectMethod' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/xtabs.Rd:55: file link 'xtabs,DataTable-method' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpMFXr0q/R.INSTALLf6472b6bf/BiocGenerics/man/xtabs.Rd:57: file link 'DataTable' in package 'S4Vectors' does not exist and so has been treated as a topic
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'BiocGenerics' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocGenerics' as BiocGenerics_0.32.0.zip
* DONE (BiocGenerics)
* installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library'
package 'BiocGenerics' successfully unpacked and MD5 sums checked