Back to the "Multiple platform build/check report"

Package 56/98HostnameOS / ArchBUILDCHECKBUILD BIN
hgu2beta7 1.2.2
Biocore Team c/o BioC user list
Snapshot Date: 2011-07-06 11:15:18 -0700 (Wed, 06 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/hgu2beta7
Last Changed Rev: 782 / Revision: 1678
Last Changed Date: 2009-05-08 12:29:52 -0700 (Fri, 08 May 2009)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: hgu2beta7
Version: 1.2.2
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch hgu2beta7_1.2.2.tar.gz
StartedAt: 2011-07-06 15:50:18 -0700 (Wed, 06 Jul 2011)
EndedAt: 2011-07-06 15:52:09 -0700 (Wed, 06 Jul 2011)
EllapsedTime: 111.1 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: hgu2beta7.Rcheck
Warnings: 2

Command output

* using log directory 'E:/biocbld/bbs-2.9-data-experiment/meat/hgu2beta7.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hgu2beta7/DESCRIPTION' ... OK
* this is package 'hgu2beta7' version '1.2.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hgu2beta7' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.0Mb
  sub-directories of 1Mb or more:
    data   6.9Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: 'annotate'
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  'Rdata.rdb' 'Rdata.rds' 'Rdata.rdx'
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  'E:/biocbld/bbs-2.9-data-experiment/meat/hgu2beta7.Rcheck/00check.log'
for details

hgu2beta7.Rcheck/00install.out:

* installing *source* package 'hgu2beta7' ...
** R
** data
**  moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hgu2beta7)

hgu2beta7.Rcheck/hgu2beta7-Ex.timings:

nameusersystemelapsed
hgu2beta7ACCNUM0.520.030.55
hgu2beta7CHR0.290.000.30
hgu2beta7CHRLENGTHS000
hgu2beta7CHRLOC0.330.010.37
hgu2beta7ENZYME0.270.000.28
hgu2beta7ENZYME2PROBE0.010.000.02
hgu2beta7GENENAME0.310.000.34
hgu2beta7GO2.460.002.64
hgu2beta7GO2ALLPROBES0.580.000.58
hgu2beta7GO2PROBE0.090.000.09
hgu2beta7GRIF0.170.020.19
hgu2beta7LOCUSID0.170.000.30
hgu2beta7MAP0.220.000.22
hgu2beta7OMIM0.170.000.17
hgu2beta7ORGANISM000
hgu2beta7PATH0.180.000.17
hgu2beta7PATH2PROBE000
hgu2beta7PMID0.670.000.70
hgu2beta7PMID2PROBE1.640.001.72
hgu2beta7REFSEQ0.720.000.72
hgu2beta7SUMFUNC0.290.010.33
hgu2beta7SYMBOL0.680.000.68
hgu2beta7UNIGENE0.270.000.26