Package: ggtut

Version: 0.0.20

Command: mkdir ggtut.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh ggtut_0.0.20.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R ggtut.buildbin-libdir

StartedAt: 2011-07-01 13:13:15 -0700 (Fri, 01 Jul 2011)

EndedAt: 2011-07-01 13:17:00 -0700 (Fri, 01 Jul 2011)

EllapsedTime: 224.6 seconds

RetCode: 0

Status:  OK

PackageFile: ggtut_0.0.20.tgz

PackageFileSize: 148.3 MiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=ggtut.buildbin-libdir ggtut_0.0.20.tar.gz'
>>>>>>> 

* installing *source* package 'ggtut' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: GGBase
Loading required package: snpStats
Loading required package: survival
Loading required package: splines
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loading required package: RSQLite
Loading required package: DBI
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: rtracklayer
Loading required package: RCurl
Loading required package: bitops
Loading required package: org.Hs.eg.db

Loading required package: GenomicRanges
Warning: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
Loading package bit1.1-7

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit

Warning: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible
Loading package ff2.2-2
- getOption("fftempdir")=="/tmp/RtmpPEeTtz"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==536870912 -- consider a different value for tuning your system


Attaching package: 'GGtools'

The following object(s) are masked from 'package:Biobase':

    geneNames

Loading required package: tools
Loading required package: bit

Attaching package: 'bit'

The following object(s) are masked from 'package:base':

    xor

Attaching package ff

Attaching package: 'ff'

The following object(s) are masked from 'package:utils':

    write.csv, write.csv2

The following object(s) are masked from 'package:base':

    is.factor, is.ordered

Loading required package: illuminaHumanv1.db

To get a tailored smlSet, use getSS("GGdata", [chrvec]) 
available chromosomes are named  1 10 ... X Y 
Loading required package: biomaRt

Attaching package: 'biomaRt'

The following object(s) are masked from 'package:annotate':

    getGO

Loading required package: multtest
Loading required package: Biostrings

Attaching package: 'Biostrings'

The following object(s) are masked from 'package:ff':

    mismatch, pattern

Loading required package: BSgenome

Attaching package: 'BSgenome'

The following object(s) are masked from 'package:annotate':

    organism

Loading required package: BSgenome.Ecoli.NCBI.20080805
Loading required package: GO.db

Loading required package: limma
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
To get a tailored smlSet, use getSS("GGdata", [chrvec]) 
available chromosomes are named  1 10 ... X Y 
Warning messages:
1: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 
2: 'DESCRIPTION' file has 'Encoding' field and re-encoding is not possible 

* DONE (ggtut)