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Package 346/514HostnameOS / ArchBUILDCHECKBUILD BIN
oligo 1.18.1
Benilton Carvalho
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/oligo
Last Changed Rev: 61988 / Revision: 64395
Last Changed Date: 2012-01-11 04:55:33 -0800 (Wed, 11 Jan 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  WARNINGS 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: oligo
Version: 1.18.1
Command: rm -rf oligo.buildbin-libdir && mkdir oligo.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=oligo.buildbin-libdir oligo_1.18.1.tar.gz >oligo-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=oligo.buildbin-libdir --install="check:oligo-install.out" --force-multiarch --no-vignettes --timings oligo_1.18.1.tar.gz && mv oligo.buildbin-libdir/* oligo.Rcheck/ && rmdir oligo.buildbin-libdir
StartedAt: 2012-03-24 02:16:45 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 02:23:22 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 397.6 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: oligo.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/oligo.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'oligo/DESCRIPTION' ... OK
* this is package 'oligo' version '1.18.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'oligo' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Problems with news in 'inst/NEWS.Rd':
  inst/NEWS.Rd:6: unknown macro '\item'
  Malformed NEWS.Rd file:
  Chunk starting
    \item Fixed message method when normalizing with large datas
  contains no \itemize.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.9-bioc/meat/oligo.Rcheck/00check.log'
for details

oligo.Rcheck/00install.out:


install for i386

* installing *source* package 'oligo' ...
** libs
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c DABG.c -o DABG.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c LESN.c -o LESN.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c PLM_avg_log.c -o PLM_avg_log.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c PLM_biweight.c -o PLM_biweight.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c PLM_log_avg.c -o PLM_log_avg.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c PLM_medianPM.c -o PLM_medianPM.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c PLM_median_logPM.c -o PLM_median_logPM.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c PLM_medianpolish.c -o PLM_medianpolish.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c PLM_modelmatrix.c -o PLM_modelmatrix.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c ParserGzXYS.c -o ParserGzXYS.o
ParserGzXYS.c: In function 'gzread_one_xys':
ParserGzXYS.c:74:54: warning: unused variable 'token' [-Wunused-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c ParserXYS.c -o ParserXYS.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c SCAB.c -o SCAB.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c baseProfile.c -o baseProfile.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c basecontent.c -o basecontent.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c common_types.c -o common_types.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c do_PLMrlm.c -o do_PLMrlm.o
do_PLMrlm.c: In function 'do_PLM_rlm':
do_PLMrlm.c:620:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c do_PLMrma.c -o do_PLMrma.o
do_PLMrma.c: In function 'do_PLMrma':
do_PLMrma.c:209:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c do_PLMthreestep.c -o do_PLMthreestep.o
do_PLMthreestep.c: In function 'do_PLMthreestep':
do_PLMthreestep.c:118:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c idealmismatch.c -o idealmismatch.o
idealmismatch.c: In function 'IdealMM_correct_single':
idealmismatch.c:71:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
idealmismatch.c: In function 'SpecificBiweightCorrect_single':
idealmismatch.c:183:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c lm_threestep.c -o lm_threestep.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c matrix_functions.c -o matrix_functions.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c nthLargestPM.c -o nthLargestPM.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c preprocess.c -o preprocess.o
preprocess.c: In function 'pp_background':
preprocess.c:159:7: warning: variable 'which_lesn' set but not used [-Wunused-but-set-variable]
preprocess.c: In function 'pp_bothstages':
preprocess.c:678:12: warning: variable 'cols' set but not used [-Wunused-but-set-variable]
preprocess.c:678:7: warning: variable 'rows' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c psi_fns.c -o psi_fns.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c qnorm_probeset.c -o qnorm_probeset.o
qnorm_probeset.c: In function 'qnorm_probeset_c':
qnorm_probeset.c:110:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c read_rmaexpress.c -o read_rmaexpress.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rlm_PLM.c -o rlm_PLM.o
rlm_PLM.c: In function 'R_rlm_PLMset_c':
rlm_PLM.c:1481:12: warning: variable 'cols' set but not used [-Wunused-but-set-variable]
rlm_PLM.c:1481:7: warning: variable 'rows' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rlm_threestep.c -o rlm_threestep.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rma_PLM.c -o rma_PLM.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
rma_common.c: In function 'median':
rma_common.c:60:7: warning: unused variable 'i' [-Wunused-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c scaling.c -o scaling.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c threestep.c -o threestep.o
threestep.c: In function 'threestep_summary':
threestep.c:82:15: warning: variable 'MM' set but not used [-Wunused-but-set-variable]
threestep.c: In function 'R_threestep_c':
threestep.c:193:12: warning: variable 'cols' set but not used [-Wunused-but-set-variable]
threestep.c:193:7: warning: variable 'rows' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c threestep_PLM.c -o threestep_PLM.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c threestep_common.c -o threestep_common.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c threestep_summary.c -o threestep_summary.o
threestep_summary.c: In function 'do_3summary':
threestep_summary.c:73:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c threestep_summary_methods.c -o threestep_summary_methods.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c transfns.c -o transfns.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -shared -s -static-libgcc -o oligo.dll tmp.def DABG.o LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o ParserGzXYS.o ParserXYS.o SCAB.o baseProfile.o basecontent.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o mas5calls.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rma2.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o trimmed.o -LD:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lRlapack -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lRblas -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/oligo.buildbin-libdir/oligo/libs/i386
** R
** inst
** preparing package for lazy loading
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Creating a generic function for 'boxplot' from package 'graphics' in package 'oligo'
Creating a generic function for 'summary' from package 'base' in package 'oligo'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'V1Overview.Rnw' 
   'V2NExpression.Rnw' 
   'V3AffySnpGenotype.Rnw' 
   'V4Experimental.Rnw' 
   'V5ExonGene.Rnw' 
** testing if installed package can be loaded
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================

add DLL for x64

* installing *source* package 'oligo' ...
** libs
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c DABG.c -o DABG.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c LESN.c -o LESN.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c PLM_avg_log.c -o PLM_avg_log.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c PLM_biweight.c -o PLM_biweight.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c PLM_log_avg.c -o PLM_log_avg.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c PLM_medianPM.c -o PLM_medianPM.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c PLM_median_logPM.c -o PLM_median_logPM.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c PLM_medianpolish.c -o PLM_medianpolish.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c PLM_modelmatrix.c -o PLM_modelmatrix.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ParserGzXYS.c -o ParserGzXYS.o
ParserGzXYS.c: In function 'gzread_one_xys':
ParserGzXYS.c:74:54: warning: unused variable 'token' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c ParserXYS.c -o ParserXYS.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c SCAB.c -o SCAB.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c baseProfile.c -o baseProfile.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c basecontent.c -o basecontent.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c common_types.c -o common_types.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c do_PLMrlm.c -o do_PLMrlm.o
do_PLMrlm.c: In function 'do_PLM_rlm':
do_PLMrlm.c:620:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c do_PLMrma.c -o do_PLMrma.o
do_PLMrma.c: In function 'do_PLMrma':
do_PLMrma.c:209:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c do_PLMthreestep.c -o do_PLMthreestep.o
do_PLMthreestep.c: In function 'do_PLMthreestep':
do_PLMthreestep.c:118:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c idealmismatch.c -o idealmismatch.o
idealmismatch.c: In function 'IdealMM_correct_single':
idealmismatch.c:71:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
idealmismatch.c: In function 'SpecificBiweightCorrect_single':
idealmismatch.c:183:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c lm_threestep.c -o lm_threestep.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c matrix_functions.c -o matrix_functions.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c nthLargestPM.c -o nthLargestPM.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c preprocess.c -o preprocess.o
preprocess.c: In function 'pp_background':
preprocess.c:159:7: warning: variable 'which_lesn' set but not used [-Wunused-but-set-variable]
preprocess.c: In function 'pp_bothstages':
preprocess.c:678:12: warning: variable 'cols' set but not used [-Wunused-but-set-variable]
preprocess.c:678:7: warning: variable 'rows' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c psi_fns.c -o psi_fns.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c qnorm_probeset.c -o qnorm_probeset.o
qnorm_probeset.c: In function 'qnorm_probeset_c':
qnorm_probeset.c:110:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c read_rmaexpress.c -o read_rmaexpress.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rlm_PLM.c -o rlm_PLM.o
rlm_PLM.c: In function 'R_rlm_PLMset_c':
rlm_PLM.c:1481:12: warning: variable 'cols' set but not used [-Wunused-but-set-variable]
rlm_PLM.c:1481:7: warning: variable 'rows' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rlm_threestep.c -o rlm_threestep.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rmaPLM_pseudo.c -o rmaPLM_pseudo.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma_PLM.c -o rma_PLM.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
rma_common.c: In function 'median':
rma_common.c:60:7: warning: unused variable 'i' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c scaling.c -o scaling.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c threestep.c -o threestep.o
threestep.c: In function 'threestep_summary':
threestep.c:82:15: warning: variable 'MM' set but not used [-Wunused-but-set-variable]
threestep.c: In function 'R_threestep_c':
threestep.c:193:12: warning: variable 'cols' set but not used [-Wunused-but-set-variable]
threestep.c:193:7: warning: variable 'rows' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c threestep_PLM.c -o threestep_PLM.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c threestep_common.c -o threestep_common.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c threestep_summary.c -o threestep_summary.o
threestep_summary.c: In function 'do_3summary':
threestep_summary.c:73:7: warning: variable 'first_ind' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c threestep_summary_methods.c -o threestep_summary_methods.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c transfns.c -o transfns.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
gcc -m64 -shared -s -static-libgcc -o oligo.dll tmp.def DABG.o LESN.o PLM_avg_log.o PLM_biweight.o PLM_log_avg.o PLM_medianPM.o PLM_median_logPM.o PLM_medianpolish.o PLM_modelmatrix.o ParserGzXYS.o ParserXYS.o SCAB.o baseProfile.o basecontent.o chipbackground.o common_types.o do_PLMrlm.o do_PLMrma.o do_PLMthreestep.o idealmismatch.o lm_threestep.o mas5calls.o matrix_functions.o nthLargestPM.o preprocess.o psi_fns.o qnorm_probeset.o read_rmaexpress.o rlm_PLM.o rlm_threestep.o rma2.o rmaPLM_pseudo.o rma_PLM.o rma_common.o scaling.o threestep.o threestep_PLM.o threestep_common.o threestep_summary.o threestep_summary_methods.o transfns.o trimmed.o -LD:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -lgfortran -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lRlapack -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lRblas -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/oligo.buildbin-libdir/oligo/libs/x64
** testing if installed package can be loaded
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
* MD5 sums
packaged installation of 'oligo' as oligo_1.18.1.zip

* DONE (oligo)