netresponse 1.6.0
Leo Lahti
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/netresponse | | Last Changed Rev: 59920 / Revision: 64395 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=netresponse.buildbin-libdir netresponse_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'netresponse' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264: warning: unused variable 'prior_fields'
netresponse.c: In function 'mLogLambda':
netresponse.c:655: warning: 'Mumu' may be used uninitialized in this function
netresponse.c:656: warning: 'KsiBeta' may be used uninitialized in this function
netresponse.c:656: warning: 'KsiAlpha' may be used uninitialized in this function
netresponse.c:656: warning: 'BetaKsi' may be used uninitialized in this function
netresponse.c:656: warning: 'AlphaKsi' may be used uninitialized in this function
netresponse.c:655: warning: 'Mutilde' may be used uninitialized in this function
netresponse.c:655: warning: 'Mubar' may be used uninitialized in this function
netresponse.c:655: warning: 'S2mu' may be used uninitialized in this function
netresponse.c:656: warning: 'U_p' may be used uninitialized in this function
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o netresponse.so netresponse.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'netresponse.Rnw'
** testing if installed package can be loaded
netresponse Copyright (C) 2008-2011 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under GNU GPL >=2, see the licensing terms for details.
* DONE (netresponse)
>>>>>>>
>>>>>>> FIXING LINKS FOR netresponse.buildbin-libdir/netresponse/libs/i386/netresponse.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "netresponse.buildbin-libdir/netresponse/libs/i386/netresponse.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "netresponse.buildbin-libdir/netresponse/libs/i386/netresponse.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "netresponse.buildbin-libdir/netresponse/libs/i386/netresponse.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "netresponse.buildbin-libdir/netresponse/libs/i386/netresponse.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=netresponse.buildbin-libdir --libs-only netresponse_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'netresponse' ...
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264: warning: unused variable 'prior_fields'
netresponse.c: In function 'mLogLambda':
netresponse.c:656: warning: 'KsiBeta' may be used uninitialized in this function
netresponse.c:656: warning: 'KsiAlpha' may be used uninitialized in this function
netresponse.c:656: warning: 'BetaKsi' may be used uninitialized in this function
netresponse.c:656: warning: 'AlphaKsi' may be used uninitialized in this function
netresponse.c:655: warning: 'Mutilde' may be used uninitialized in this function
netresponse.c:655: warning: 'Mubar' may be used uninitialized in this function
netresponse.c:655: warning: 'S2mu' may be used uninitialized in this function
netresponse.c:655: warning: 'Mumu' may be used uninitialized in this function
netresponse.c:656: warning: 'U_p' may be used uninitialized in this function
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o netresponse.so netresponse.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/ppc
* DONE (netresponse)
>>>>>>>
>>>>>>> FIXING LINKS FOR netresponse.buildbin-libdir/netresponse/libs/ppc/netresponse.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "netresponse.buildbin-libdir/netresponse/libs/ppc/netresponse.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "netresponse.buildbin-libdir/netresponse/libs/ppc/netresponse.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "netresponse.buildbin-libdir/netresponse/libs/ppc/netresponse.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "netresponse.buildbin-libdir/netresponse/libs/ppc/netresponse.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=netresponse.buildbin-libdir --libs-only netresponse_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'netresponse' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264: warning: unused variable 'prior_fields'
netresponse.c: In function 'mLogLambda':
netresponse.c:656: warning: 'KsiBeta' may be used uninitialized in this function
netresponse.c:656: warning: 'KsiAlpha' may be used uninitialized in this function
netresponse.c:656: warning: 'BetaKsi' may be used uninitialized in this function
netresponse.c:656: warning: 'AlphaKsi' may be used uninitialized in this function
netresponse.c:655: warning: 'Mutilde' may be used uninitialized in this function
netresponse.c:655: warning: 'Mubar' may be used uninitialized in this function
netresponse.c:655: warning: 'S2mu' may be used uninitialized in this function
netresponse.c:655: warning: 'Mumu' may be used uninitialized in this function
netresponse.c:656: warning: 'U_p' may be used uninitialized in this function
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o netresponse.so netresponse.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/x86_64
* DONE (netresponse)
>>>>>>>
>>>>>>> FIXING LINKS FOR netresponse.buildbin-libdir/netresponse/libs/x86_64/netresponse.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "netresponse.buildbin-libdir/netresponse/libs/x86_64/netresponse.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "netresponse.buildbin-libdir/netresponse/libs/x86_64/netresponse.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "netresponse.buildbin-libdir/netresponse/libs/x86_64/netresponse.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "netresponse.buildbin-libdir/netresponse/libs/x86_64/netresponse.so"