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Package 311/514HostnameOS / ArchBUILDCHECKBUILD BIN
metaArray 1.32.0
Hyungwon Choi
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/metaArray
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: metaArray
Version: 1.32.0
Command: rm -rf metaArray.buildbin-libdir && mkdir metaArray.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=metaArray.buildbin-libdir metaArray_1.32.0.tar.gz >metaArray-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=metaArray.buildbin-libdir --install="check:metaArray-install.out" --force-multiarch --no-vignettes --timings metaArray_1.32.0.tar.gz && mv metaArray.buildbin-libdir/* metaArray.Rcheck/ && rmdir metaArray.buildbin-libdir
StartedAt: 2012-03-24 02:04:28 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 02:05:19 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 51.5 seconds
RetCode: 0
Status:  OK  
CheckDir: metaArray.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/metaArray.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'metaArray/DESCRIPTION' ... OK
* this is package 'metaArray' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'metaArray' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
poe.mcmc: no visible binding for global variable 'R0'
* checking Rd files ... NOTE
prepare_Rd: em.draw.Rd:28-30: Dropping empty section \examples
prepare_Rd: find.init.Rd:20-21: Dropping empty section \examples
prepare_Rd: fit.em.Rd:31-33: Dropping empty section \examples
prepare_Rd: poe.em.Rd:22: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

metaArray.Rcheck/00install.out:


install for i386

* installing *source* package 'metaArray' ...
** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c contr.c -o contr.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c dproc2.c -o dproc2.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c intcor.c -o intcor.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c lowess.c -o lowess.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c mmath.c -o mmath.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c perm.c -o perm.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -DUSEDOUBLE -DWINDOWS   -O3 -Wall  -std=gnu99 -mtune=core2 -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
gcc -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'metaArray.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'metaArray' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c contr.c -o contr.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c dproc.c -o dproc.o
dproc.c: In function 'malloc_CH':
dproc.c:111:21: warning: variable 'num' set but not used [-Wunused-but-set-variable]
dproc.c: In function 'free_CH':
dproc.c:192:16: warning: unused variable 'nc' [-Wunused-variable]
dproc.c:192:12: warning: variable 'nr' set but not used [-Wunused-but-set-variable]
dproc.c:192:7: warning: variable 'num' set but not used [-Wunused-but-set-variable]
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c dproc2.c -o dproc2.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c intcor.c -o intcor.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c lowess.c -o lowess.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c mmath.c -o mmath.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c perm.c -o perm.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -DUSEDOUBLE -DWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c poe.c -o poe.o
poe.c: In function 'poe_one_iter':
poe.c:131:53: warning: variable 'shift' set but not used [-Wunused-but-set-variable]
poe.c:120:20: warning: variable 'accept' set but not used [-Wunused-but-set-variable]
gcc -m64 -shared -s -static-libgcc -o metaArray.dll tmp.def contr.o dproc.o dproc2.o intcor.o lowess.o mmath.o perm.o poe.o -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/metaArray.buildbin-libdir/metaArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'metaArray' as metaArray_1.32.0.zip

* DONE (metaArray)