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Package 294/516HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.18.0
Gustavo H. Esteves
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/maigesPack
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  ERROR  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: maigesPack
Version: 1.18.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch maigesPack_1.18.0.tar.gz
StartedAt: 2012-01-09 04:02:18 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 04:09:36 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 438.1 seconds
RetCode: 0
Status:  OK  
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/maigesPack.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'maigesPack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
               old_size new_size compress
  gastro.RData    836Kb    459Kb       xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package 'maigesPack' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c Minfo.c -o Minfo.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c bootstrapT.c -o bootstrapT.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c register.c -o register.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c robustCorr.c -o robustCorr.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c stats.c -o stats.o
stats.c: In function 'stats_median_from_sorted_data':
stats.c:80:22: warning: operation on 'i' may be undefined
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/maigesPack.Rcheck/maigesPack/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'maigesPack_tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI0.010.000.01
activeMod3.080.023.10
activeModScoreHTML1.530.021.69
activeNet4.720.014.73
activeNetScoreHTML4.670.004.68
addGeneGrps000
addPaths000
bootstrapCor0.050.000.05
bootstrapMI0.230.000.23
bootstrapT000
boxplot-methods114.55 8.22122.81
bracketMethods0.260.000.27
calcA0.220.060.28
calcW0.220.100.31
classifyKNN0.310.000.33
classifyKNNsc0.420.000.42
classifyLDA1.390.001.39
classifyLDAsc2.210.012.22
classifySVM0.730.000.75
classifySVMsc1.10.01.1
coerce-methods0.180.000.18
compCorr000
createMaigesRaw0.470.000.47
deGenes2by2BootT0.660.000.66
deGenes2by2Ttest0.340.000.34
deGenes2by2Wilcox0.330.000.33
deGenesANOVA0.310.020.33
designANOVA0.130.010.14
dim-methods0.090.000.16
getLabels0.100.020.11
hierM2.350.052.40
hierMde0.460.040.50
image-methods4.510.004.52
kmeansM2.130.002.12
kmeansMde0.580.000.58
loadData000
normLoc2.220.002.22
normOLIN0.090.000.09
normRepLoess0.090.000.10
normScaleLimma102.75 4.43107.22
normScaleMarray46.10 1.6247.81
plot-methods 9.23 0.0511.06
plotGenePair0.130.000.13
print-methods0.180.000.19
relNet2TGF0.190.000.19
relNetworkB2.190.002.18
relNetworkM0.110.020.13
robustCorr000
selSpots0.400.010.42
show-methods0.190.000.19
somM2.690.022.72
somMde0.510.020.53
summarizeReplicates2.240.002.23
summary-methods0.190.000.19
tableClass0.980.000.98
tablesDE5.200.045.25