Package: maSigPro

Version: 1.26.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch maSigPro_1.26.0.tar.gz

StartedAt: 2012-01-09 04:06:47 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 04:08:00 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 72.3 seconds

RetCode: 0

Status:  OK

CheckDir: maSigPro.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/maSigPro.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maSigPro/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'maSigPro' version '1.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'maSigPro' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'maSigPro/R/zzz.R':
  .First.lib calls:
    require(Biobase)

Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.

* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'maSigPro' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'maSigPro-tutorial.Rnw' 
** testing if installed package can be loaded

* DONE (maSigPro)

name	user	system	elapsed
PlotGroups	0.02	0.00	0.01
PlotProfiles	0.00	0.01	0.02
T.fit	8.51	0.02	8.53
average.rows	0	0	0
data.abiotic	0.03	0.00	0.03
edesign.OD	0	0	0
edesign.abiotic	0	0	0
edesignCT	0	0	0
edesignDR	0	0	0
get.siggenes	3.58	0.00	3.58
i.rank	0	0	0
maSigPro	5.66	0.06	5.72
make.design.matrix	0.01	0.00	0.01
p.vector	2.06	0.01	2.08
position	0	0	0
reg.coeffs	0	0	0
see.genes	1.62	0.24	1.86
stepback	0.03	0.00	0.03
stepfor	0.14	0.00	0.15
suma2Venn	0.02	0.00	0.01
two.ways.stepback	0.14	0.00	0.14
two.ways.stepfor	0.15	0.00	0.16