Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H [I] J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 260/516HostnameOS / ArchBUILDCHECKBUILD BIN
inveRsion 1.2.0
Alejandro Caceres
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/inveRsion
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: inveRsion
Version: 1.2.0
Command: chmod a+r inveRsion -R && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data inveRsion
StartedAt: 2012-01-09 00:11:31 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 00:12:43 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 71.4 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'inveRsion/DESCRIPTION' ... OK
* preparing 'inveRsion':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: haplo.stats
-Code haplotypes-
  reading data from haplotype file:
  D:/biocbld/bbs-2.9-bioc/tmpdir/RtmpAPYDth/Rinst10387cd67bfa/inveRsion/extdata/haplotypesROI.txt 

  preparing data
  Number of brakepoints: 248

-computation done-
-Scan for inversions-
  checking previos results
  building blocks b1 b2 around candidate brake-points
  Number of brake-points:248

 saving file b1b2.txt
-computing inversion model-

  Maximum brake-points to be tested 248

-computation done-

Error: processing vignette 'inveRsion.Rnw' failed with diagnostics:
 chunk 5 
Error in getInv(x, thBic = thBic, Like = Like) : 
  Error: no segments selected
Execution halted