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Package 229/516HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.32.0
Seth Falcon
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/graph
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ WARNINGS ] OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: graph
Version: 1.32.0
Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch graph_1.32.0.tar.gz
StartedAt: 2012-01-09 03:32:17 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 03:33:29 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 72.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: graph.Rcheck
Warnings: 1

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/graph.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.32.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
  BioC_graph.dll
These are unlikely file names for src files.
* checking if there is a namespace ... OK
* checking whether package 'graph' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.9-bioc/meat/graph.Rcheck/00check.log'
for details

graph.Rcheck/00install.out:

* installing *source* package 'graph' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c graph.c -o graph.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
mv graph.dll BioC_graph.dll
installing to D:/biocbld/bbs-2.9-bioc/meat/graph.Rcheck/graph/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'GraphClass.Rnw' 
   'MultiGraphClass.Rnw' 
   'clusterGraph.Rnw' 
   'graph.Rnw' 
   'graphAttributes.Rnw' 
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.110.000.11
IMCA0.240.000.23
MAPKsig0.190.000.19
MultiGraph-class0.120.000.12
acc-methods0.020.000.02
addEdge0.010.000.01
addNode0.020.000.02
adj-methods000
apoptosisGraph0.040.000.05
attrData-class000
aveNumEdges0.020.000.02
biocRepos000
boundary0.010.000.01
buildRepDepGraph000
calcProb000
calcSumProb000
clearNode0.020.000.02
clusterGraph-class000
clusteringCoefficient-methods0.010.000.01
combineNodes0.050.000.05
distGraph-class000
duplicatedEdges000
edgeMatrix0.020.000.02
edgeSets0.060.000.06
edgeWeights000
fromGXL-methods0.510.000.53
graph-class000
graph2SparseM0.280.000.28
graphAM-class0.020.000.01
graphBAM-class0.030.020.05
graphExamples000
graphNEL-class000
inEdges0.020.000.01
leaves0.010.000.02
listEdges000
matrix2Graph0.050.000.04
mostEdges0.020.000.02
numNoEdges0.010.000.02
pancrCaIni0.100.000.09
randomEGraph0.010.000.01
randomGraph0.020.000.02
randomNodeGraph000
removeEdge0.010.000.02
removeNode000
renderInfo-class0.020.000.01
reverseEdgeDirections000
simpleEdge-class000
standardLabeling0.080.000.08
subGraph0.010.000.02
toDotR-methods0.030.000.03
ugraph0.020.000.01
validGraph000