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Package 207/514HostnameOS / ArchBUILDCHECKBUILD BIN
genomes 2.0.0
Chris Stubben
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/genomes
Last Changed Rev: 63034 / Revision: 64395
Last Changed Date: 2012-02-23 14:22:02 -0800 (Thu, 23 Feb 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  ERROR  OK 

Summary

Package: genomes
Version: 2.0.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings genomes_2.0.0.tar.gz
StartedAt: 2012-03-24 00:36:15 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 00:38:03 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 108.2 seconds
RetCode: 0
Status:  OK 
CheckDir: genomes.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/genomes.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genomes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomes’ version ‘2.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘genomes’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
               old_size new_size compress
  complete.rda     56Kb     41Kb       xz
  leuks.rda        49Kb     40Kb       xz
  lproks.rda      307Kb    233Kb       xz
  pub.rda          66Kb     56Kb       xz
  sra.rda         501Kb    324Kb       xz
  virus.rda        83Kb     63Kb       xz
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

genomes.Rcheck/00install.out:

* installing *source* package ‘genomes’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘genome-tables.Rnw’ 
** testing if installed package can be loaded

* DONE (genomes)

genomes.Rcheck/genomes-Ex.timings:

nameusersystemelapsed
complete0.0520.0000.051
doublingTime0.2920.0160.306
enaExperiment2.1560.0167.207
enaFiles0.0080.0000.843
enaProject000
enaSRA1.2240.0083.091
enaStudy1.6600.0044.555
enaSubmission0.0040.0000.407
enaTaxonomy0.0160.0042.340
genomes-lines0.3680.0080.376
genomes-plot0.2640.0040.270
genomes-print0.2200.0000.218
genomes-subset0.1000.0040.103
genomes-summary0.0240.0000.022
genomes-update0.0040.0000.003
genomes0.2600.0000.265
genus0.2800.0000.278
image20.2560.0040.259
lenvs0.0160.0040.019
leuks0.1200.0040.125
like0.1480.0000.150
lproks0.3680.0080.376
ncbiGenome000
ncbiInfo0.0680.0040.755
ncbiNucleotide0.4880.0123.591
ncbiProject0.760.001.80
ncbiPubmed0.1480.0041.378
ncbiRelease 0.108 0.00028.025
ncbiSubmit0.1280.0002.540
ncbiTaxonomy0.1560.0041.232
plotby0.5360.0160.557
pub0.0480.0080.056
species0.4240.0000.425
sra0.7480.0000.749
table20.0160.0000.016
top0.3360.0000.338
virus0.1320.0000.132
year0.1120.0000.112