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Package 179/514HostnameOS / ArchBUILDCHECKBUILD BIN
flowWorkspace 1.0.2
Greg Finak
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/flowWorkspace
Last Changed Rev: 62262 / Revision: 64395
Last Changed Date: 2012-01-25 12:26:12 -0800 (Wed, 25 Jan 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flowWorkspace
Version: 1.0.2
Command: rm -rf flowWorkspace.buildbin-libdir && mkdir flowWorkspace.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=flowWorkspace.buildbin-libdir flowWorkspace_1.0.2.tar.gz >flowWorkspace-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=flowWorkspace.buildbin-libdir --install="check:flowWorkspace-install.out" --force-multiarch --no-vignettes --timings flowWorkspace_1.0.2.tar.gz && mv flowWorkspace.buildbin-libdir/* flowWorkspace.Rcheck/ && rmdir flowWorkspace.buildbin-libdir
StartedAt: 2012-03-24 01:22:15 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:26:43 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 267.6 seconds
RetCode: 0
Status:  OK  
CheckDir: flowWorkspace.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/flowWorkspace.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowWorkspace/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'flowWorkspace' version '1.0.2'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  'multicore' 'Rmpi' 'ncdf4'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'flowWorkspace' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
writeGatesToNetCDF: no visible global function definition for
  'ncdim_def'
writeGatesToNetCDF: no visible global function definition for
  'ncvar_def'
writeGatesToNetCDF: no visible global function definition for
  'nc_create'
writeGatesToNetCDF: no visible global function definition for
  'ncvar_put'
writeGatesToNetCDF: no visible global function definition for
  'nc_close'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'run-all.R'
 OK
** running tests for arch 'x64'
  Running 'run-all.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowWorkspace.Rcheck/00install.out:


install for i386

* installing *source* package 'flowWorkspace' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -O3 -Wall  -std=gnu99 -mtune=core2   -O3 -Wall  -std=gnu99 -mtune=core2 -c bitOps.c -o bitOps.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -O3 -Wall  -std=gnu99 -mtune=core2   -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc  -I"D:/biocbld/BBS-2˜1.9-B/R/include"       -O3 -Wall  -std=gnu99 -mtune=core2   -O3 -Wall  -std=gnu99 -mtune=core2 -c netCDF.c -o netCDF.o
gcc -shared -s -static-libgcc -o flowWorkspace.dll tmp.def bitOps.o init.o netCDF.o -lm -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs/i386
** R
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning: replacing previous import '.__C__character' when loading 'methods'
Creating a generic function for 'lapply' from package 'base' in package 'flowWorkspace'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'flowWorkspace.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning message:
replacing previous import '.__C__character' when loading 'methods' 

add DLL for x64

* installing *source* package 'flowWorkspace' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -O2 -Wall  -std=gnu99 -mtune=core2   -O2 -Wall  -std=gnu99 -mtune=core2 -c bitOps.c -o bitOps.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -O2 -Wall  -std=gnu99 -mtune=core2   -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include"     -I"d:/RCompile/CRANpkg/extralibs64/local/include"  -O2 -Wall  -std=gnu99 -mtune=core2   -O2 -Wall  -std=gnu99 -mtune=core2 -c netCDF.c -o netCDF.o
gcc -m64 -shared -s -static-libgcc -o flowWorkspace.dll tmp.def bitOps.o init.o netCDF.o -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/flowWorkspace.buildbin-libdir/flowWorkspace/libs/x64
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning messages:
1: replacing previous import '.__C__character' when loading 'methods' 
2: In fun(libname, pkgname) :
  Rgraphviz built with Graphviz version 2.20.3.
Found installed Graphviz version 2.25.20090912.445. This _may_ cause problems.
* MD5 sums
packaged installation of 'flowWorkspace' as flowWorkspace_1.0.2.zip

* DONE (flowWorkspace)