flowQ 1.13.0
F. Hahne
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowQ | | Last Changed Rev: 54802 / Revision: 56351 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ ERROR ] | skipped | skipped |
* checking for file ‘flowQ/DESCRIPTION’ ... OK
* preparing ‘flowQ’:
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: outliers
Loading required package: lattice
Loading required package: flowViz
Loading required package: flowCore
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
‘browseVignettes()’. To cite Bioconductor, see
‘citation("Biobase")’ and for packages ‘citation("pkgname")’.
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Attaching package: ‘flowCore’
The following object(s) are masked from ‘package:stats’:
alias, filter
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: mvoutlier
Loading required package: compositions
Loading required package: rgl
Loading required package: tensorA
Attaching package: ‘tensorA’
The following object(s) are masked from ‘package:base’:
norm
Loading required package: energy
Loading required package: boot
Attaching package: ‘boot’
The following object(s) are masked from ‘package:robustbase’:
salinity
The following object(s) are masked from ‘package:lattice’:
melanoma
Loading required package: MASS
Attaching package: ‘compositions’
The following object(s) are masked from ‘package:flowCore’:
normalize
The following object(s) are masked from ‘package:stats’:
cor, cov, dist, var
The following object(s) are masked from ‘package:base’:
%*%, scale, scale.default
Loading required package: robCompositions
Loading required package: car
Loading required package: nnet
Loading required package: survival
Loading required package: splines
Attaching package: ‘survival’
The following object(s) are masked from ‘package:boot’:
aml
The following object(s) are masked from ‘package:robustbase’:
heart
Attaching package: ‘car’
The following object(s) are masked from ‘package:boot’:
logit
Attaching package: ‘robCompositions’
The following object(s) are masked from ‘package:compositions’:
alr, clr, ilr
Loading required package: bioDist
Loading required package: KernSmooth
Loading required package: parody
Loading required package: tools
Loading required package: RColorBrewer
Loading required package: latticeExtra
Attaching package: ‘latticeExtra’
The following object(s) are masked from ‘package:flowViz’:
ecdfplot
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
**** Warning: File has an invalid xref entry: 14. Rebuilding xref table.
**** This file had errors that were repaired or ignored.
**** The file was produced by:
**** >>>> ImageMagick 6.3.3 03/06/07 Q16 http://www.imagemagick.org <<<<
**** Please notify the author of the software that produced this
**** file that it does not conform to Adobe‘s published PDF
**** specification.
**** Warning: File has an invalid xref entry: 14. Rebuilding xref table.
**** This file had errors that were repaired or ignored.
**** The file was produced by:
**** >>>> ImageMagick 6.3.3 03/06/07 Q16 http://www.imagemagick.org <<<<
**** Please notify the author of the software that produced this
**** file that it does not conform to Adobe’s published PDF
**** specification.
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
Warning in names(agTmp) <- parms :
Class ‘aggregatorList’ has no ‘names’ slot; assigning a names attribute will create an invalid object
**** Warning: File has an invalid xref entry: 14. Rebuilding xref table.
**** This file had errors that were repaired or ignored.
**** The file was produced by:
**** >>>> ImageMagick 6.3.3 03/06/07 Q16 http://www.imagemagick.org <<<<
**** Please notify the author of the software that produced this
**** file that it does not conform to Adobe‘s published PDF
**** specification.
**** Warning: File has an invalid xref entry: 14. Rebuilding xref table.
**** This file had errors that were repaired or ignored.
**** The file was produced by:
**** >>>> ImageMagick 6.3.3 03/06/07 Q16 http://www.imagemagick.org <<<<
**** Please notify the author of the software that produced this
**** file that it does not conform to Adobe’s published PDF
**** specification.
Error: processing vignette ‘DataQualityAssessment.Rnw’ failed with diagnostics:
chunk 14 (label = displayBoundaryData)
Error in names(agTmp[[j]]) <- paste(dyes[j]) :
Class ‘binaryAggregator’ has no ‘names’ slot
Execution halted