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Package 166/516HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.20.0
Mike Jiang
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/flowCore
Last Changed Rev: 61510 / Revision: 61898
Last Changed Date: 2011-12-20 15:38:31 -0800 (Tue, 20 Dec 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: flowCore
Version: 1.20.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch flowCore_1.20.0.tar.gz
StartedAt: 2012-01-09 03:02:56 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 03:05:46 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 170.5 seconds
RetCode: 0
Status:  OK  
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/flowCore.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.20.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.2Mb
  sub-directories of 1Mb or more:
    data      5.0Mb
    doc       1.2Mb
    extdata   1.1Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

flowCore.Rcheck/00install.out:

* installing *source* package 'flowCore' ...
** libs
g++  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c FastLogicle.cpp -o FastLogicle.o
g++  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c Logicle.cpp -o Logicle.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c biexponential.c -o biexponential.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c inPolygon.c -o inPolygon.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c inPolytope.c -o inPolytope.o
gcc  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
g++  -I"E:/biocbld/BBS-2˜1.9-B/R/include"          -O2 -Wall  -mtune=core2 -c logicleTransform.cpp -o logicleTransform.o
g++ -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Logicle.o biexponential.o inPolygon.o inPolytope.o init.o logicleTransform.o -LE:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/flowCore.Rcheck/flowCore/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning: replacing previous import '.__C__character' when loading 'methods'
Creating a new generic function for 'filter' in package 'flowCore'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'HowTo-flowCore.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
Warning message:
replacing previous import '.__C__character' when loading 'methods' 

* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.210.000.20
Subset-methods1.030.031.07
actionItem-class000
arcsinhTransform0.170.010.18
asinht-class0.050.000.05
biexponentialTransform15.50 0.1515.67
boundaryFilter-class0.140.000.14
characterOrTransformation-class000
coerce0.210.010.22
compensateActionItem-class000
compensateView-class000
compensatedParameter-class0.280.000.28
compensation-class0.530.000.53
curv1Filter-class0.440.020.45
curv2Filter-class2.480.012.50
dg1polynomial-class0.060.000.07
each_col-methods0.060.000.06
ellipsoidGate0.080.020.09
exponential-class0.070.000.06
expressionFilter-class0.100.000.11
fcReference-class000
filter-methods1.820.061.88
filter-on-methods0.150.020.17
filterList-class0.020.000.02
filterResult-class000
filterResultList-class2.610.092.71
filterSet-class0.050.000.05
filterSummary-class0.20.00.2
filterSummaryList-class2.310.002.32
flowFrame-class5.440.055.51
flowSet-class4.270.014.30
fsApply0.250.000.25
gateActionItem-class0.020.000.01
gateView-class000
hyperlog-class1.600.021.66
identifier-methods0.050.000.04
inverseLogicleTransform1.630.061.69
invsplitscale-class0.060.000.06
keyword-methods1.800.021.82
kmeansFilter0.230.000.23
linearTransform0.060.000.06
lnTransform4.170.094.28
logTransform0.070.000.07
logarithm-class0.150.010.17
logicalFilterResult-class000
logicleTransform1.720.031.75
manyFilterResult-class000
multipleFilterResult-class000
norm2Filter-class0.210.000.25
normalizeActionItem-class000
normalizeView-class000
parameters-methods0.040.000.05
polygonGate0.10.00.1
quadGate0.250.000.25
quadratic-class0.060.000.06
quadraticTransform0.060.000.06
ratio-class0.050.000.05
read.FCS0.040.030.08
read.FCSheader0.020.000.01
read.flowSet0.190.000.19
rectangleGate0.140.000.14
sampleFilter-class0.080.000.08
scaleTransform0.060.000.06
singleParameterTransform-class000
sinht-class0.060.000.06
split-methods2.350.072.41
splitScaleTransform3.750.093.84
splitscale-class0.150.020.17
squareroot-class0.050.000.05
subsettingActionItem-class000
subsettingView-class000
timeFilter-class2.950.022.97
transform-class000
transformActionItem-class000
transformFilter-class0.170.000.17
transformList-class1.680.011.68
transformMap-class000
transformView-class000
truncateTransform0.060.000.07
unitytransform-class0.040.000.04
view-class000
workFlow-class000
write.FCS0.080.020.10
write.flowSet1.940.011.95