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Package 121/516HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.12.1
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/crlmm
Last Changed Rev: 60337 / Revision: 61898
Last Changed Date: 2011-11-15 11:00:53 -0800 (Tue, 15 Nov 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  ERROR 

Summary

Package: crlmm
Version: 1.12.1
Command: rm -rf crlmm.buildbin-libdir && mkdir crlmm.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=crlmm.buildbin-libdir crlmm_1.12.1.tar.gz
StartedAt: 2012-01-09 06:28:33 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 06:28:58 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 25.3 seconds
RetCode: 0
Status:  OK  
PackageFile: crlmm_1.12.1.zip
PackageFileSize: 12.77 MiB

Command output

* installing *source* package 'crlmm' ...
** libs
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c gtypeCaller.c -o gtypeCaller.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c init.c -o init.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c trimmed.c -o trimmed.o
x86_64-w64-mingw32-gcc  -I"D:/biocbld/bbs-2.9-bioc/R/include"          -O2 -Wall  -std=gnu99 -mtune=core2 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124:15: warning: unused variable 'n_ignore'
utils.c: In function 'normalizeBAF':
utils.c:178:7: warning: suggest parentheses around comparison in operand of '&'
utils.c:180:7: warning: suggest parentheses around comparison in operand of '&'
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/x64
** R
** data
** inst
** preparing package for lazy loading
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'AffymetrixPreprocessCN.Rnw' 
   'CopyNumberOverview.Rnw' 
   'IlluminaPreprocessCN.Rnw' 
   'Infrastructure.Rnw' 
   'copynumber.Rnw' 
   'crlmmDownstream.Rnw' 
   'genotyping.Rnw' 
** testing if installed package can be loaded
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
* MD5 sums
packaged installation of 'crlmm' as crlmm_1.12.1.zip

* DONE (crlmm)