Package: cellHTS

Version: 1.24.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch cellHTS_1.24.0.tar.gz

StartedAt: 2012-01-09 01:51:03 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 01:53:14 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 130.7 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/cellHTS.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS/DESCRIPTION' ... OK
* this is package 'cellHTS' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'cellHTS' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.0Mb
  sub-directories of 1Mb or more:
    data     1.4Mb
    doc      2.1Mb
    KcViab   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'cellHTS/R/zzz.R':
  .onAttach calls:
    message(paste("\n-------------------------------------------------------------------",     "\nA note from the 'cellHTS' package:", "\nThe package 'cellHTS2' offers better functionality for working with",     "\nmultiple screens and with multi-channel screens. Please consider",     "\nusing 'cellHTS2' for new projects. However, 'cellHTS' will be",     "\nsupported for a while to help with your existing projects.",     "\n-------------------------------------------------------------------\n\n",     sep = ""))

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in ?.onAttach.

* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                  old_size new_size compress
  KcViab.rda         586Kb    325Kb       xz
  KcViabSmall.rda     39Kb     22Kb       xz
  bdgpbiomart.rda    773Kb    452Kb       xz
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'cellHTS' ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'cellhts.Rnw' 
   'twoChannels.Rnw' 
   'twoWay.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (cellHTS)

name	user	system	elapsed
Bscore	0.54	0.02	0.56
ROC	0	0	0
annotate	0	0	0
bdgpbiomart	0.20	0.00	0.21
configure	0	0	0
data-KcViab	0.35	0.00	0.34
data-KcViabSmall	0	0	0
getEnVisionRawData	0.04	0.00	0.05
getLibraryPlate	0.02	0.00	0.01
getMatrix	0.01	0.00	0.02
imageScreen	0.08	0.00	0.08
normalizeChannels	0	0	0
normalizePlates	0.02	0.00	0.01
oneRowPerId	0	0	0
plotPlateLibrary	0.86	0.00	0.86
plotSpatialEffects	0.40	0.01	0.43
print.cellHTS	0.02	0.00	0.01
readPlateData	0.14	0.00	0.14
screenMatch	0.42	0.02	0.44
summarizeChannels	0	0	0
summarizeReplicates	0.06	0.00	0.06
write.tabdel	0.02	0.00	0.02
writeReport	0	0	0
writeTab	0.03	0.01	0.05