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Package 13/514HostnameOS / ArchBUILDCHECKBUILD BIN
affy 1.32.1
Rafael A. Irizarry
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/affy
Last Changed Rev: 62374 / Revision: 64395
Last Changed Date: 2012-01-30 06:50:45 -0800 (Mon, 30 Jan 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK [ OK ]
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: affy
Version: 1.32.1
Command: rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=affy.buildbin-libdir affy_1.32.1.tar.gz
StartedAt: 2012-03-24 03:24:21 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 03:25:04 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 42.7 seconds
RetCode: 0
Status:  OK  
PackageFile: affy_1.32.1.zip
PackageFileSize: 1.411 MiB

Command output


install for i386

* installing *source* package 'affy' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc  -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include"      -O3 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LD:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/affy.buildbin-libdir/affy/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'open' from package 'base' in package 'affy'
Creating a generic function for 'close' from package 'base' in package 'affy'
Creating a generic function for 'colnames' from package 'base' in package 'affy'
Creating a generic function for 'barplot' from package 'graphics' in package 'affy'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'affy.Rnw' 
   'builtinMethods.Rnw' 
   'customMethods.Rnw' 
   'vim.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'affy' ...

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
gcc -m64 -I"D:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/include" -I"D:/biocbld/BBS-2˜1.9-B/R/include" -DHAVE_ZLIB   -I"D:/biocbld/bbs-2.9-bioc/R/library/preprocessCore/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
gcc -m64 -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LD:/biocbld/bbs-2.9-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/affy.buildbin-libdir/affy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affy' as affy_1.32.1.zip

* DONE (affy)