SLGI 1.14.0 Nolwenn Le Meur
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/SLGI | Last Changed Rev: 59920 / Revision: 61898 | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/SLGI.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking installed package size ... NOTE
installed size is 25.4Mb
sub-directories of 1Mb or more:
data 13.7Mb
extdata 11.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: 'YEAST'
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
Atong.rda 13Kb 6Kb bzip2
AtongFnDomain.rda 6.3Mb 188Kb xz
AtongPair.rda 57Kb 20Kb xz
Boeke2006raw.rda 24Kb 16Kb xz
SGA.rda 14Kb 9Kb bzip2
SGAraw.rda 13Kb 9Kb xz
SGD.SL.rda 895Kb 499Kb xz
SGD.SynGrowthDefect.rda 869Kb 488Kb xz
SGD.SynRescue.rda 851Kb 486Kb xz
TFmat.rda 1008Kb 625Kb xz
dSLAM.GPL1444.rda 335Kb 139Kb xz
dSLAM.rda 30Kb 5Kb xz
gi2005.rda 768Kb 456Kb xz
gi2007.rda 2.6Mb 1.2Mb xz
tong2004raw.RData 44Kb 28Kb xz
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
A specification for S3 class "connection" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
A specification for S3 class "file" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
Creating a generic function for 'plot' from package 'graphics' in package 'SLGI'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'SLGI.Rnw'
** testing if installed package can be loaded
* DONE (SLGI)