Package: RCASPAR

Version: 0.99.2

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RCASPAR_0.99.2.tar.gz

StartedAt: 2011-06-22 04:53:04 -0700 (Wed, 22 Jun 2011)

EndedAt: 2011-06-22 04:53:33 -0700 (Wed, 22 Jun 2011)

EllapsedTime: 28.9 seconds

RetCode: 0

Status:  OK

CheckDir: RCASPAR.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/RCASPAR.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RCASPAR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RCASPAR’ version ‘0.99.2’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RCASPAR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘RCASPAR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘RCASPAR.Rnw’ 
** testing if installed package can be loaded

* DONE (RCASPAR)

name	user	system	elapsed
Bergamaschi	0.025	0.003	0.028
RCASPAR-package	1.189	0.024	1.236
STpredictor_BLH	0.178	0.005	0.190
STpredictor_xvBLH	1.637	0.020	1.675
deriv_weight_estimator_BLH	0.006	0.001	0.008
deriv_weight_estimator_BLH_noprior	0.006	0.001	0.007
kmplt	0.005	0.001	0.005
kmplt_svrl	0.016	0.000	0.016
logrnk	0.007	0.000	0.007
pltgamma	0.002	0.000	0.002
pltprior	0.002	0.000	0.002
simpson	0.001	0.000	0.001
survData	0.003	0.001	0.004
survivAURC	0.355	0.004	0.362
survivROC	0.102	0.002	0.105
trapezoid	0.001	0.000	0.001
weight_estimator_BLH	0	0	0
weight_estimator_BLH_noprior	0.007	0.001	0.009
weights_BLH	0.015	0.001	0.016
weights_xvBLH	0.123	0.002	0.126