R453Plus1Toolbox 1.4.0
Hans-Ulrich Klein
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/R453Plus1Toolbox | | Last Changed Rev: 59920 / Revision: 64395 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
install for i386
* installing *source* package 'R453Plus1Toolbox' ...
** libs
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c readSFF.c -o readSFF.o
gcc -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'vignette.Rnw'
** testing if installed package can be loaded
add DLL for x64
* installing *source* package 'R453Plus1Toolbox' ...
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying na to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.CAT.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying ual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.CAT.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying na to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.TCA.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying ual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\1.TCA.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying na to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.CAT.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying ual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.CAT.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying na to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.TCA.454Reads.fna: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying ual to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\2.TCA.454Reads.qual: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying rics.csv to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454BaseCallerMetrics.csv: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying rics.txt to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454BaseCallerMetrics.txt: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying gDir.xml to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454DataProcessingDir.xml: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying Metrics.csv to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454QualityFilterMetrics.csv: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying Metrics.txt to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454QualityFilterMetrics.txt: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying sAll.csv to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454RuntimeMetricsAll.csv: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying sAll.txt to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\454RuntimeMetricsAll.txt: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying l to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\dataRunParams.xml: No such file or directory
Warning in file.copy(instdir, lockdir, recursive = TRUE) :
problem copying og to D:\biocbld\bbs-2.9-bioc\meat\R453Plus1Toolbox.buildbin-libdir\00LOCK-R453Plus1Toolbox\R453Plus1Toolbox\extdata\StructuralVariantDetection\R_2009_07_30_14_26_52_FLX12080469_Administrator_714003\D_2009_07_31_08_45_30_flxcluster_fullProcessing_714003\gsRunProcessor.log: No such file or directory
** libs
gcc -m64 -I"D:/biocbld/BBS-2˜1.9-B/R/include" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c readSFF.c -o readSFF.o
gcc -m64 -shared -s -static-libgcc -o R453Plus1Toolbox.dll tmp.def readSFF.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'R453Plus1Toolbox' as R453Plus1Toolbox_1.4.0.zip
* DONE (R453Plus1Toolbox)