PICS 1.8.0
Arnaud Droit
| Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/PICS | | Last Changed Rev: 59920 / Revision: 61898 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'PICS' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O3 -Wall -std=gnu99 -mtune=core2 -c background.c -o background.o
background.c: In function 'background':
background.c:44:9: warning: statement with no effect
background.c:97:9: warning: statement with no effect
background.c:12:10: warning: unused variable 'length'
background.c:10:26: warning: unused variable 'countR'
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O3 -Wall -std=gnu99 -mtune=core2 -c pics.c -o pics.o
pics.c: In function 'iterEM':
pics.c:581:25: warning: unused variable 'mu'
pics.c: In function 'ECM1':
pics.c:804:3: warning: suggest parentheses around comparison in operand of '&'
pics.c:964:3: warning: suggest parentheses around comparison in operand of '&'
pics.c:652:15: warning: unused variable 'k'
pics.c: In function 'ECM2':
pics.c:1010:66: warning: unused variable 'ee'
pics.c:1010:57: warning: unused variable 'ggR'
pics.c:1010:52: warning: unused variable 'ggF'
pics.c:1010:47: warning: unused variable 'aaR'
pics.c:1010:42: warning: unused variable 'aaF'
pics.c:1010:29: warning: unused variable 'etaDiff'
pics.c:1001:15: warning: unused variable 'k'
pics.c: In function 'BIC':
pics.c:1273:96: warning: unused variable 'k'
pics.c: In function 'getInfMat':
pics.c:1634:76: warning: unused variable 'PhiRw'
pics.c:1634:69: warning: unused variable 'PhiFw'
pics.c: In function 'mergePeak':
pics.c:1890:11: warning: unused variable 'j'
pics.c:1890:7: warning: unused variable 'i'
pics.c: In function 'BIC':
pics.c:1276:35: warning: 'penalty' may be used uninitialized in this function
pics.c: In function 'fitModelK':
pics.c:421:7: warning: 'ans' may be used uninitialized in this function
pics.c:421:18: warning: 'firstFit' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O3 -Wall -std=gnu99 -mtune=core2 -c segment.c -o segment.o
segment.c: In function 'segReads':
segment.c:106:3: warning: suggest parentheses around comparison in operand of '&'
segment.c:97:45: warning: unused variable 'count'
segment.c: In function 'callRegions':
segment.c:248:7: warning: unused variable 'i'
segment.c: In function 'getSegL':
segment.c:1284:11: warning: unused variable 'j'
segment.c: In function 'getDensity':
segment.c:1461:9: warning: suggest parentheses around comparison in operand of '&'
segment.c:1462:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1463:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1464:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1465:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1466:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1467:11: warning: suggest parentheses around comparison in operand of '&'
segment.c:1409:8: warning: unused variable 'filter1'
segment.c:1408:11: warning: unused variable 'muFilter'
gcc -shared -s -static-libgcc -o PICS.dll tmp.def background.o pics.o segment.o -lws2_32 -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/PICS.buildbin-libdir/PICS/libs/i386
** R
** inst
** preparing package for lazy loading
in method for 'as.list' with signature '"AlignedRead"': no definition for class "AlignedRead"
in method for 'coerce' with signature '"AlignedRead","GenomeData"': no definition for class "AlignedRead"
Creating a generic function for 'density' from package 'stats' in package 'PICS'
Creating a generic function for 'plot' from package 'graphics' in package 'PICS'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'PICS.Rnw'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PICS' as PICS_1.8.0.zip
* DONE (PICS)