Package: MLInterfaces

Version: 1.34.2

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch MLInterfaces_1.34.2.tar.gz

StartedAt: 2012-03-24 02:37:11 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 02:42:05 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 293.4 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.9-bioc/meat/MLInterfaces.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.34.2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: MLIntInternals.Rd:40-41: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'MLInterfaces' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'MLInterfaces.Rnw' 
   'MLint_devel.Rnw' 
   'MLprac2_2.Rnw' 
   'xvalComputerClusters.Rnw' 
** testing if installed package can be loaded

* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	29.247	1.210	31.459
RAB	0.241	0.011	0.254
balKfold.xvspec	0.010	0.003	0.012
classifierOutput-class	7.221	0.070	7.374
clusteringOutput-class	0.001	0.000	0.001
confuMat-methods	0.990	0.058	1.062
fs.absT	0.025	0.001	0.026
fsHistory	0.147	0.008	0.168
learnerSchema-class	0.001	0.000	0.001
planarPlot-methods	4.867	0.461	5.426
predict.classifierOutput	5.792	0.288	6.160
raboostCont-class	0.002	0.000	0.002
varImpStruct-class	1.978	0.124	2.134
xvalLoop	0.001	0.001	0.001
xvalSpec	0.316	0.006	0.322