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Package 234/510HostnameOS / ArchBUILDCHECKBUILD BIN
GWASTools 0.9.8
Stephanie Gogarten
Snapshot Date: 2011-10-19 18:22:16 -0700 (Wed, 19 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GWASTools
Last Changed Rev: 59437 / Revision: 59441
Last Changed Date: 2011-10-19 15:41:54 -0700 (Wed, 19 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 [ ERROR ] skipped  skipped 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  ERROR  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GWASTools
Version: 0.9.8
Command: chmod a+r GWASTools -R && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GWASTools
StartedAt: 2011-10-20 00:12:30 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 00:13:03 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 33.6 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GWASTools/DESCRIPTION' ... OK
* preparing 'GWASTools':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: ncdf
Loading required package: GWASExactHW
Loading required package: sandwich
Loading required package: zoo

Attaching package: 'zoo'

The following object(s) are masked from 'package:base':

    as.Date


**************************************************************************
   The plan to change the data format for CNA object has been postponed   
 in order to ensure backward compatibility with older versions of DNAcopy 
**************************************************************************

block 1 of 1
Thu Oct 20 00:12:53 2011	Load genotype dataset ...
Thu Oct 20 00:12:53 2011	Start ...
Thu Oct 20 00:12:53 2011	1/3	GAINmixHapMapAffy1
Thu Oct 20 00:12:53 2011	2/3	GAINmixHapMapAffy2
Thu Oct 20 00:12:53 2011	3/3	GAINmixHapMapAffy3
Thu Oct 20 00:12:53 2011	End ...

Error: processing vignette 'DataCleaning.Rnw' failed with diagnostics:
 chunk 63 
Error in library(gdsfmt) : there is no package called 'gdsfmt'
Execution halted