GRENITS 1.6.0
Edward Morrissey
| Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/GRENITS | | Last Changed Rev: 59920 / Revision: 61898 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | [ OK ] |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'GRENITS' ...
** libs
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c AR1_Gauss_biocond.cc -o AR1_Gauss_biocond.o
AR1_Gauss_biocond.cc: In function 'void Error_Gauss_c(std::string&, arma::mat&, arma::colvec&, arma::mat&)':
AR1_Gauss_biocond.cc:49:30: warning: unused variable 'numDiag'
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c AR1_Student_biocond.cc -o AR1_Student_biocond.o
AR1_Student_biocond.cc: In function 'void Error_Student_c(std::string&, arma::mat&, arma::colvec&, arma::mat&)':
AR1_Student_biocond.cc:49:30: warning: unused variable 'numDiag'
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c AR1_biocond.cc -o AR1_biocond.o
AR1_biocond.cc: In function 'void AR1_c(std::string&, arma::mat&, arma::colvec&, arma::mat&)':
AR1_biocond.cc:48:30: warning: unused variable 'numDiag'
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c PSplines_biocond.cc -o PSplines_biocond.o
PSplines_biocond.cc: In function 'void PSplines_c(std::string&, arma::mat&, arma::colvec&, arma::mat&)':
PSplines_biocond.cc:45:63: warning: unused variable 'numDiag'
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c R_C_interface.cpp -o R_C_interface.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c ReadMCMCFiles.cpp -o ReadMCMCFiles.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c commonFunctions.cc -o commonFunctions.o
commonFunctions.cc:22:66: warning: declaration of 'void dtrtrs_(char*, char*, char*, arma::blas_int*, arma::blas_int*, double*, arma::blas_int*, double*, arma::blas_int*, arma::blas_int*)' with C language linkage
D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include/armadillo_bits/lapack_bones.hpp:290:1: warning: conflicts with previous declaration 'void arma::dtrtrs_(char*, char*, char*, arma::blas_int*, arma::blas_int*, const double*, arma::blas_int*, double*, arma::blas_int*, arma::blas_int*)'
commonFunctions.cc: In function 'void random_intSequence(arma::ucolvec&)':
commonFunctions.cc:270:27: warning: comparison between signed and unsigned integer expressions
commonFunctions.cc: In function 'void processFixedGammas(arma::mat&, int&, int&, arma::umat&, arma::umat&, arma::ucolvec&, arma::umat&, arma::uvec&, arma::uvec&)':
commonFunctions.cc:377:33: warning: comparison between signed and unsigned integer expressions
commonFunctions.cc:380:35: warning: comparison between signed and unsigned integer expressions
commonFunctions.cc: In function 'void updateCoefficients_reg(arma::mat&, const int&, const arma::urowvec&, const arma::mat&, const arma::rowvec&, const arma::ucolvec&)':
commonFunctions.cc:440:59: warning: unused variable 'num_on'
commonFunctions.cc: In function 'void updateCoefficients(arma::mat&, const int&, const arma::urowvec&, const arma::mat&, const arma::rowvec&)':
commonFunctions.cc:482:59: warning: unused variable 'num_on'
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c functionsErrorModel.cc -o functionsErrorModel.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c matrixManipulationFunctions.cc -o matrixManipulationFunctions.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c updateFunctions_AR1.cc -o updateFunctions_AR1.o
updateFunctions_AR1.cc: In function 'void updateCoeffAndGibbsVars(arma::mat&, arma::umat&, const arma::colvec&, const arma::mat&, const arma::mat&, const arma::mat&, const double&, const unsigned int&)':
updateFunctions_AR1.cc:128:36: warning: comparison between signed and unsigned integer expressions
updateFunctions_AR1.cc:134:11: warning: comparison between signed and unsigned integer expressions
updateFunctions_AR1.cc: In function 'void updateCoeffAndGibbsVars_reg(arma::mat&, arma::umat&, const arma::colvec&, const arma::mat&, const arma::mat&, double, const double&, const unsigned int&, arma::umat&, arma::ucolvec&, arma::umat&)':
updateFunctions_AR1.cc:186:44: warning: comparison between signed and unsigned integer expressions
updateFunctions_AR1.cc: In function 'void calc_logMVPDF_withLinks(double&, const arma::mat&, const arma::rowvec&, arma::urowvec&)':
updateFunctions_AR1.cc:264:59: warning: unused variable 'num_on'
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.9-bioc/R/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/include" -I"D:/biocbld/bbs-2.9-bioc/R/library/RcppArmadillo/include" -O2 -Wall -mtune=core2 -c updateFunctions_Splines.cc -o updateFunctions_Splines.o
updateFunctions_Splines.cc: In function 'void updateTaus_reg(arma::mat&, arma::colvec&, const arma::mat&, arma::urowvec&, const arma::mat&, double, double, int, double, double, double, double, int, double, arma::uvec)':
updateFunctions_Splines.cc:296:13: warning: comparison between signed and unsigned integer expressions
updateFunctions_Splines.cc: In function 'void updateGammaAndB_row_i_reg(arma::mat&, arma::umat&, const arma::mat&, const arma::rowvec&, const arma::colvec&, int, int, int, arma::urowvec&, const arma::ucolvec&, const arma::urowvec&, const arma::ucolvec&, const arma::uvec&)':
updateFunctions_Splines.cc:478:40: warning: comparison between signed and unsigned integer expressions
updateFunctions_Splines.cc: In function 'void fixedBasesFromFixedRegs(arma::umat&, arma::umat&, arma::ucolvec&, int)':
updateFunctions_Splines.cc:714:33: warning: comparison between signed and unsigned integer expressions
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o GRENITS.dll tmp.def AR1_Gauss_biocond.o AR1_Student_biocond.o AR1_biocond.o PSplines_biocond.o R_C_interface.o ReadMCMCFiles.o commonFunctions.o functionsErrorModel.o matrixManipulationFunctions.o updateFunctions_AR1.o updateFunctions_Splines.o D:/biocbld/bbs-2.9-bioc/R/library/Rcpp/lib/x64/libRcpp.a -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lRlapack -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lRblas -lgfortran -LD:/biocbld/bbs-2.9-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/GRENITS.buildbin-libdir/GRENITS/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'GRENITS_package.Rnw'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GRENITS' as GRENITS_1.6.0.zip
* DONE (GRENITS)