Package: BioSeqClass

Version: 1.12.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch BioSeqClass_1.12.0.tar.gz

StartedAt: 2012-01-09 01:37:22 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 01:41:24 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 242.5 seconds

RetCode: 0

Status:  OK

CheckDir: BioSeqClass.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/BioSeqClass.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BioSeqClass/DESCRIPTION' ... OK
* this is package 'BioSeqClass' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'BioSeqClass' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.0Mb
  sub-directories of 1Mb or more:
    data      5.1Mb
    scripts   3.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: selectWeka.Rd:49-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: 'scatterplot3d'
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
               old_size new_size compress
  DiProDB.rda      15Kb     12Kb       xz
  aa.index.rda    127Kb     71Kb    bzip2
  dssp.ss.rda     5.0Mb    2.8Mb       xz
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'BioSeqClass' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'BioSeqClass.Rnw' 
** testing if installed package can be loaded

* DONE (BioSeqClass)

name	user	system	elapsed
basic	0.63	0.00	0.63
classify	9.08	0.07	13.06
featureAAindex	0.02	0.00	0.02
featureBDNAVIDEO	0	0	0
featureBinary	0	0	0
featureCKSAAP	0	0	0
featureCTD	0	0	0
featureDIPRODB	0	0	0
featureDOMAIN	0	0	0
featureEvaluate	0.03	0.00	0.03
featureFragmentComposition	0	0	0
featureGapPairComposition	0	0	0
featureHydro	0	0	0
featurePSSM	0	0	0
featurePseudoAAComp	0	0	0
featureSSC	0	0	0
hr	0	0	0
model	2.05	0.05	2.09
performance	2.2	0.0	2.2
selectFFS	1.10	0.02	1.11