Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S [T] U  V  W  X  Y  Z 

Package 497/514HostnameOS / ArchBUILDCHECKBUILD BIN
tweeDEseq 1.0.14
Juan R Gonzalez
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/tweeDEseq
Last Changed Rev: 63362 / Revision: 64395
Last Changed Date: 2012-03-02 08:22:40 -0800 (Fri, 02 Mar 2012)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: tweeDEseq
Version: 1.0.14
Command: rm -rf tweeDEseq.buildbin-libdir && mkdir tweeDEseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh tweeDEseq_1.0.14.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R tweeDEseq.buildbin-libdir
StartedAt: 2012-03-24 05:51:02 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 05:51:13 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 11.8 seconds
RetCode: 0
Status:  OK 
PackageFile: tweeDEseq_1.0.14.tgz
PackageFileSize: 357.8 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=tweeDEseq.buildbin-libdir tweeDEseq_1.0.14.tar.gz'
>>>>>>> 

* installing *source* package 'tweeDEseq' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c init_tweeDEseq.c -o init_tweeDEseq.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c permtest.c -o permtest.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c probs.c -o probs.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c zhu2.c -o zhu2.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tweeDEseq.so init_tweeDEseq.o permtest.o probs.o zhu2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'tweeDEseq.Rnw' 
** testing if installed package can be loaded

* DONE (tweeDEseq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386/tweeDEseq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/i386/tweeDEseq.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=tweeDEseq.buildbin-libdir --libs-only tweeDEseq_1.0.14.tar.gz'
>>>>>>> 

* installing *source* package 'tweeDEseq' ...
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c init_tweeDEseq.c -o init_tweeDEseq.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c permtest.c -o permtest.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c probs.c -o probs.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c zhu2.c -o zhu2.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tweeDEseq.so init_tweeDEseq.o permtest.o probs.o zhu2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/ppc

* DONE (tweeDEseq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR tweeDEseq.buildbin-libdir/tweeDEseq/libs/ppc/tweeDEseq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/ppc/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/ppc/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/ppc/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/ppc/tweeDEseq.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=tweeDEseq.buildbin-libdir --libs-only tweeDEseq_1.0.14.tar.gz'
>>>>>>> 

* installing *source* package 'tweeDEseq' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c init_tweeDEseq.c -o init_tweeDEseq.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c permtest.c -o permtest.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c probs.c -o probs.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c zhu2.c -o zhu2.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tweeDEseq.so init_tweeDEseq.o permtest.o probs.o zhu2.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/tweeDEseq.buildbin-libdir/tweeDEseq/libs/x86_64

* DONE (tweeDEseq)


>>>>>>> 
>>>>>>> FIXING LINKS FOR tweeDEseq.buildbin-libdir/tweeDEseq/libs/x86_64/tweeDEseq.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/x86_64/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/x86_64/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/x86_64/tweeDEseq.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "tweeDEseq.buildbin-libdir/tweeDEseq/libs/x86_64/tweeDEseq.so"