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Package 429/514HostnameOS / ArchBUILDCHECKBUILD BIN
rnaSeqMap 2.8.0
Michal Okoniewski
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/rnaSeqMap
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: rnaSeqMap
Version: 2.8.0
Command: rm -rf rnaSeqMap.buildbin-libdir && mkdir rnaSeqMap.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh rnaSeqMap_2.8.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R rnaSeqMap.buildbin-libdir
StartedAt: 2012-03-24 05:41:20 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 05:42:20 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 60.0 seconds
RetCode: 0
Status:  OK 
PackageFile: rnaSeqMap_2.8.0.tgz
PackageFileSize: 26.06 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=rnaSeqMap.buildbin-libdir rnaSeqMap_2.8.0.tar.gz'
>>>>>>> 

* installing *source* package 'rnaSeqMap' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c gcoverage.c -o gcoverage.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c ghistogram.c -o ghistogram.o
ghistogram.c: In function 'ghistogram':
ghistogram.c:31: warning: operation on 'k' may be undefined
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c regionmining.c -o regionmining.o
regionmining.c: In function 'avg':
regionmining.c:12: warning: operation on 'n' may be undefined
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c splicingind.c -o splicingind.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'rnaSeqMap.Rnw' 
** testing if installed package can be loaded

* DONE (rnaSeqMap)


>>>>>>> 
>>>>>>> FIXING LINKS FOR rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386/rnaSeqMap.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/i386/rnaSeqMap.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=rnaSeqMap.buildbin-libdir --libs-only rnaSeqMap_2.8.0.tar.gz'
>>>>>>> 

* installing *source* package 'rnaSeqMap' ...
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c gcoverage.c -o gcoverage.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c ghistogram.c -o ghistogram.o
ghistogram.c: In function 'ghistogram':
ghistogram.c:31: warning: operation on 'k' may be undefined
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c regionmining.c -o regionmining.o
regionmining.c: In function 'avg':
regionmining.c:12: warning: operation on 'n' may be undefined
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c splicingind.c -o splicingind.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/ppc

* DONE (rnaSeqMap)


>>>>>>> 
>>>>>>> FIXING LINKS FOR rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/ppc/rnaSeqMap.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/ppc/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/ppc/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/ppc/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/ppc/rnaSeqMap.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=rnaSeqMap.buildbin-libdir --libs-only rnaSeqMap_2.8.0.tar.gz'
>>>>>>> 

* installing *source* package 'rnaSeqMap' ...
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c gcoverage.c -o gcoverage.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c ghistogram.c -o ghistogram.o
ghistogram.c: In function 'ghistogram':
ghistogram.c:31: warning: operation on 'k' may be undefined
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c regionmining.c -o regionmining.o
regionmining.c: In function 'avg':
regionmining.c:12: warning: operation on 'n' may be undefined
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c splicingind.c -o splicingind.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o rnaSeqMap.so Rinit.o gcoverage.o ghistogram.o regionmining.o splicingind.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x86_64

* DONE (rnaSeqMap)


>>>>>>> 
>>>>>>> FIXING LINKS FOR rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x86_64/rnaSeqMap.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x86_64/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x86_64/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x86_64/rnaSeqMap.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "rnaSeqMap.buildbin-libdir/rnaSeqMap/libs/x86_64/rnaSeqMap.so"