qtbase 1.0.0
Michael Lawrence
| Snapshot Date: 2012-03-02 18:22:01 -0800 (Fri, 02 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/qtbase | | Last Changed Rev: 59920 / Revision: 63385 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | [ WARNINGS ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | N O T S U P P O R T E D |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘qtbase/DESCRIPTION’ ... OK
* this is package ‘qtbase’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory ‘qtbase/src’ contains object files.
* checking if there is a namespace ... OK
* checking whether package ‘qtbase’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 76.7Mb
sub-directories of 1Mb or more:
libs 35.2Mb
local 37.5Mb
qdoc 3.4Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
print.RQtClass: no visible binding for global variable ‘protected’
qmetadata<- : <anonymous>: no visible binding for global variable
‘this’
qsetProperty : <anonymous>: no visible binding for global variable
‘this’
qsetRefClass : getMethodNames: no visible binding for global variable
‘static’
qsetRefClass : getMethodNames: no visible binding for global variable
‘constructor’
qsetSignal : <anonymous>: no visible binding for global variable ‘this’
qsignals: no visible binding for global variable ‘type’
qslots: no visible binding for global variable ‘type’
qsmokeClass: no visible binding for global variable ‘static’
qsmokeClass: no visible binding for global variable ‘protected’
* checking Rd files ... NOTE
prepare_Rd: qsetStyleSheet.Rd:37-39: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... WARNING
Undocumented arguments in documentation object 'qsetClass'
‘...’
Functions with \usage entries need to have the appropriate \alias
entries, and all their arguments documented.
The \usage entries must correspond to syntactically valid R code.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘slots.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
‘/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00check.log’
for details
* installing *source* package ‘qtbase’ ...
** libs
** arch -
mkdir -p ../kdebindings-build;
cd ../kdebindings-build; \
cmake ../kdebindings -DCMAKE_INSTALL_PREFIX=../inst/local; \
LD_LIBRARY_PATH=../../generator/bin make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found.
-- Found Qt-Version 4.7.1 (using /usr/bin/qmake)
Qt QTDECLARATIVE library not found.
Qt QTWEBKIT library not found.
Qt QTXMLPATTERNS library not found.
-- Found Perl: /usr/bin/perl
-- Checking how Qt was built...
-- Threshold is set to 10
-- QT_NO_DEBUG *Undefined*
-- QT_NO_ACCESSIBILITY *Undefined*
-- QT_NO_BUTTONGROUP *Undefined*
-- QT_NO_COLORDIALOG *Undefined*
-- QT_NO_DATETIMEEDIT *Undefined*
-- QT_NO_DIALOG *Undefined*
-- QT_NO_ERRORMESSAGE *Undefined*
-- QT_NO_FILEDIALOG *Undefined*
-- QT_NO_FONTDIALOG *Undefined*
-- QT_NO_GROUPBOX *Undefined*
-- QT_NO_LCDNUMBER *Undefined*
-- QT_NO_LINEEDIT *Undefined*
-- QT_NO_LISTVIEW *Undefined*
-- QT_NO_MAINWINDOW *Undefined*
-- QT_NO_MENUBAR *Undefined*
-- QT_NO_MESSAGEBOX *Undefined*
-- QT_NO_PRINTDIALOG *Undefined*
-- QT_NO_PROGRESSBAR *Undefined*
-- QT_NO_PROGRESSDIALOG *Undefined*
-- QT_NO_PUSHBUTTON *Undefined*
-- QT_NO_RADIOBUTTON *Undefined*
-- QT_NO_SCROLLBAR *Undefined*
-- QT_NO_SLIDER *Undefined*
-- QT_NO_STYLE_PLASTIQUE *Undefined*
-- QT_NO_STYLE_WINDOWSXP [Defined]
-- QT_NO_STYLE_WINDOWS *Undefined*
-- QT_NO_STYLE_MAC [Defined]
-- QT_NO_STYLE_CLEANLOOKS *Undefined*
-- QT_NO_TABLEVIEW *Undefined*
-- QT_NO_TEXTBROWSER *Undefined*
-- QT_NO_TEXTEDIT *Undefined*
-- QT_NO_TOOLBUTTON *Undefined*
-- QT_OPENGL_LIB [Defined]
-- QT_SCRIPT_LIB [Defined]
-- QT_SVG_LIB [Defined]
-- QT_UITOOLS_LIB [Defined]
-- QT_HELP_LIB [Defined]
-- QT_MULTIMEDIA_LIB [Defined]
-- QT_GUI_LIB [Defined]
-- QT_TEST_LIB [Defined]
-- QT_DBUS_LIB [Defined]
-- QT_XML_LIB [Defined]
-- QT_SQL_LIB [Defined]
-- QT_NETWORK_LIB [Defined]
-- QT_CORE_LIB [Defined]
-- Build Smoke... yes - Qt
-- Configuring done
-- Generating done
-- Build files have been written to: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build
make[1]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[2]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target cppparser
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 1%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/ast.cpp.o
[ 3%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/default_visitor.cpp.o
[ 4%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/memorypool.cpp.o
[ 6%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/visitor.cpp.o
[ 8%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/control.cpp.o
[ 9%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/lexer.cpp.o
[ 11%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/parser.cpp.o
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.h:36,
from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:23:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:1036:2: warning: #warning "implement me"
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:2604:2: warning: #warning "implemente me (AST)"
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.cpp:3490:2: warning: #warning "mark the ast as constant"
[ 13%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/listnode.cpp.o
[ 14%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/tokens.cpp.o
[ 16%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/dumptree.cpp.o
[ 18%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/parsesession.cpp.o
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp: In destructor ‘ParseSession::˜ParseSession()’:
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42:10: warning: possible problem detected in invocation of delete operator:
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42:10: warning: invalid use of incomplete type ‘struct rpp::MacroBlock’
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.h:43:23: warning: forward declaration of ‘struct rpp::MacroBlock’
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parsesession.cpp:42:10: note: neither the destructor nor the class-specific operator delete will be called, even if they are declared when the class is defined.
[ 19%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/commentparser.cpp.o
[ 21%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/commentformatter.cpp.o
[ 22%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/codegenerator.cpp.o
[ 24%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/indexedstring.cpp.o
[ 26%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/stringhelpers.cpp.o
[ 27%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-stream.cpp.o
[ 29%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-macro-expander.cpp.o
[ 31%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-scanner.cpp.o
[ 32%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-macro.cpp.o
[ 34%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-engine.cpp.o
[ 36%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-internal.cpp.o
[ 37%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-environment.cpp.o
[ 39%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/pp-location.cpp.o
[ 40%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/preprocessor.cpp.o
[ 42%] Building CXX object generator/parser/CMakeFiles/cppparser.dir/rpp/chartools.cpp.o
Linking CXX shared library ../bin/libcppparser.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 42%] Built target cppparser
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target smokegen
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 44%] Building CXX object generator/CMakeFiles/smokegen.dir/main.cpp.o
In file included from /usr/include/c++/4.5/ext/hash_map:60:0,
from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/parser/parser.h:36,
from /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/main.cpp:32:
/usr/include/c++/4.5/backward/backward_warning.h:28:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated.
[ 45%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorenvironment.cpp.o
[ 47%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorvisitor.cpp.o
[ 49%] Building CXX object generator/CMakeFiles/smokegen.dir/generatorpreprocessor.cpp.o
[ 50%] Building CXX object generator/CMakeFiles/smokegen.dir/options.cpp.o
[ 52%] Building CXX object generator/CMakeFiles/smokegen.dir/type_compiler.cpp.o
[ 54%] Building CXX object generator/CMakeFiles/smokegen.dir/name_compiler.cpp.o
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/generator/name_compiler.cpp:139:2: warning: #warning "NameCompiler::visitUnqualifiedName() -- implement me"
[ 55%] Building CXX object generator/CMakeFiles/smokegen.dir/type.cpp.o
Linking CXX executable bin/smokegen
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 55%] Built target smokegen
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target generator_smoke
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 57%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/generator_smoke.cpp.o
[ 59%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/writeClasses.cpp.o
[ 60%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/writeSmokeDataFile.cpp.o
[ 62%] Building CXX object generator/generators/smoke/CMakeFiles/generator_smoke.dir/helpers.cpp.o
Linking CXX shared module ../../bin/generator_smoke.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 62%] Built target generator_smoke
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Scanning dependencies of target generator_dump
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 63%] Building CXX object generator/generators/dump/CMakeFiles/generator_dump.dir/generator_dump.cpp.o
Linking CXX shared module ../../bin/generator_dump.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 63%] Built target generator_dump
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 65%] Generating smokedata.cpp, x_1.cpp, x_2.cpp, x_3.cpp, x_4.cpp, x_5.cpp, x_6.cpp, x_7.cpp, x_8.cpp, x_9.cpp, x_10.cpp, x_11.cpp, x_12.cpp, x_13.cpp, x_14.cpp, x_15.cpp, x_16.cpp, x_17.cpp, x_18.cpp, x_19.cpp, x_20.cpp
using generator "/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build/generator/bin/generator_smoke.so"
include directory "QT_QTXMLPATTERNS_INCLUDE_DIR-NOTFOUND" doesn't exist
include directory "QT_QTWEBKIT_INCLUDE_DIR-NOTFOUND" doesn't exist
include directory "QT_QTDECLARATIVE_INCLUDE_DIR-NOTFOUND" doesn't exist
parsing "/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings/smoke/qt/qt_includes.h"
Generating SMOKE sources...
preparing SMOKE data [qt]
writing out smokedata.cpp [qt]
writing out x_*.cpp [qt]
Done.
Scanning dependencies of target smokeqt
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[ 67%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/smokedata.cpp.o
[ 68%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_1.cpp.o
[ 70%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_2.cpp.o
[ 72%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_3.cpp.o
[ 73%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_4.cpp.o
[ 75%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_5.cpp.o
[ 77%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_6.cpp.o
[ 78%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_7.cpp.o
[ 80%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_8.cpp.o
[ 81%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_9.cpp.o
[ 83%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_10.cpp.o
[ 85%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_11.cpp.o
[ 86%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_12.cpp.o
[ 88%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_13.cpp.o
[ 90%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_14.cpp.o
[ 91%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_15.cpp.o
[ 93%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_16.cpp.o
[ 95%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_17.cpp.o
[ 96%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_18.cpp.o
[ 98%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_19.cpp.o
[100%] Building CXX object smoke/qt/CMakeFiles/smokeqt.dir/x_20.cpp.o
Linking CXX static library libsmokeqt.a
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
[100%] Built target smokeqt
make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[2]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Linking CXX executable CMakeFiles/CMakeRelink.dir/smokegen
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Linking CXX shared library CMakeFiles/CMakeRelink.dir/libcppparser.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Linking CXX shared module CMakeFiles/CMakeRelink.dir/generator_smoke.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Linking CXX shared module CMakeFiles/CMakeRelink.dir/generator_dump.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
Install the project...
-- Install configuration: ""
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/bin/smokegen
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorenvironment.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generator_export.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorpreprocessor.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/generatorvisitor.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/name_compiler.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/options.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/type_compiler.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smokegen/type.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/libcppparser.so
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/smokegen/generator_smoke.so
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/smokegen/generator_dump.so
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smoke.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/include/smoke/qt_smoke.h
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/lib/libsmokeqt.a
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/share/kdebindings/qtdefines
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/inst/local/share/kdebindings/config.xml
make[1]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/kdebindings-build'
mkdir -p ../src-build;
cd ../src-build; \
cmake ../src \
-DR_LIBRARIES="-L/home/biocbuild/bbs-2.9-bioc/R/lib -lR" \
-DR_INCLUDES=/home/biocbuild/bbs-2.9-bioc/R/include \
-DCMAKE_INSTALL_PREFIX=../src; \
make install
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/gcc
-- Check for working C compiler: /usr/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Looking for Q_WS_X11
-- Looking for Q_WS_X11 - found
-- Looking for Q_WS_WIN
-- Looking for Q_WS_WIN - not found.
-- Looking for Q_WS_QWS
-- Looking for Q_WS_QWS - not found.
-- Looking for Q_WS_MAC
-- Looking for Q_WS_MAC - not found.
-- Found Qt-Version 4.7.1 (using /usr/bin/qmake)
Qt QTDECLARATIVE library not found.
Qt QTWEBKIT library not found.
Qt QTXMLPATTERNS library not found.
-- Configuring done
-- Generating done
-- Build files have been written to: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build
make[1]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[2]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
[ 2%] Generating moc_EventLoop.cxx
Scanning dependencies of target qtbase
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
[ 5%] Building CXX object CMakeFiles/qtbase.dir/init.cpp.o
[ 7%] Building CXX object CMakeFiles/qtbase.dir/EventLoop.cpp.o
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/EventLoop.cpp:23:50: warning: deprecated conversion from string constant to ‘char*’
/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/EventLoop.cpp:23:50: warning: deprecated conversion from string constant to ‘char*’
[ 10%] Building CXX object CMakeFiles/qtbase.dir/convert.cpp.o
[ 13%] Building CXX object CMakeFiles/qtbase.dir/wrap.cpp.o
[ 15%] Building CXX object CMakeFiles/qtbase.dir/metaobject.cpp.o
[ 18%] Building CXX object CMakeFiles/qtbase.dir/connect.cpp.o
[ 21%] Building CXX object CMakeFiles/qtbase.dir/invoke.cpp.o
[ 23%] Building CXX object CMakeFiles/qtbase.dir/dynamicqobject.cpp.o
[ 26%] Building CXX object CMakeFiles/qtbase.dir/RDynamicQObject.cpp.o
[ 28%] Building CXX object CMakeFiles/qtbase.dir/ClassFactory.cpp.o
[ 31%] Building CXX object CMakeFiles/qtbase.dir/Class.cpp.o
[ 34%] Building CXX object CMakeFiles/qtbase.dir/SmokeClass.cpp.o
[ 36%] Building CXX object CMakeFiles/qtbase.dir/MocClass.cpp.o
[ 39%] Building CXX object CMakeFiles/qtbase.dir/RClass.cpp.o
[ 42%] Building CXX object CMakeFiles/qtbase.dir/classes.cpp.o
[ 44%] Building CXX object CMakeFiles/qtbase.dir/ForeignMethod.cpp.o
[ 47%] Building CXX object CMakeFiles/qtbase.dir/SmokeMethod.cpp.o
[ 50%] Building CXX object CMakeFiles/qtbase.dir/RMethod.cpp.o
[ 52%] Building CXX object CMakeFiles/qtbase.dir/MocMethod.cpp.o
[ 55%] Building CXX object CMakeFiles/qtbase.dir/DynamicBinding.cpp.o
[ 57%] Building CXX object CMakeFiles/qtbase.dir/MocDynamicBinding.cpp.o
[ 60%] Building CXX object CMakeFiles/qtbase.dir/MethodCall.cpp.o
[ 63%] Building CXX object CMakeFiles/qtbase.dir/type-handlers.cpp.o
[ 65%] Building CXX object CMakeFiles/qtbase.dir/MocStack.cpp.o
[ 68%] Building CXX object CMakeFiles/qtbase.dir/MocProperty.cpp.o
[ 71%] Building CXX object CMakeFiles/qtbase.dir/RProperty.cpp.o
[ 73%] Building CXX object CMakeFiles/qtbase.dir/SmokeModule.cpp.o
[ 76%] Building CXX object CMakeFiles/qtbase.dir/module.cpp.o
[ 78%] Building CXX object CMakeFiles/qtbase.dir/RSmokeBinding.cpp.o
[ 81%] Building CXX object CMakeFiles/qtbase.dir/SmokeList.cpp.o
[ 84%] Building CXX object CMakeFiles/qtbase.dir/SmokeObject.cpp.o
[ 86%] Building CXX object CMakeFiles/qtbase.dir/ObjectTable.cpp.o
[ 89%] Building CXX object CMakeFiles/qtbase.dir/InstanceObjectTable.cpp.o
[ 92%] Building CXX object CMakeFiles/qtbase.dir/smoke.cpp.o
[ 94%] Building CXX object CMakeFiles/qtbase.dir/DataFrameModel.cpp.o
[ 97%] Building CXX object CMakeFiles/qtbase.dir/RTextFormattingDelegate.cpp.o
[100%] Building CXX object CMakeFiles/qtbase.dir/moc_EventLoop.cxx.o
Linking CXX shared library qtbase.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
[100%] Built target qtbase
make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[2]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[3]: Entering directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
Linking CXX shared library CMakeFiles/CMakeRelink.dir/qtbase.so
make[3]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
make[2]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
Install the project...
-- Install configuration: ""
-- Installing: /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src/./qtbase.so
make[1]: Leaving directory `/loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/00_pkg_src/qtbase/src-build'
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/qtbase.Rcheck/qtbase/libs
** R
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘qtbase.Rnw’
** testing if installed package can be loaded
* DONE (qtbase)