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Package 368/514HostnameOS / ArchBUILDCHECKBUILD BIN
pgUtils 1.26.0
Johannes Rainer
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/pgUtils
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK [ OK ]
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: pgUtils
Version: 1.26.0
Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings pgUtils_1.26.0.tar.gz
StartedAt: 2012-03-24 01:58:16 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 01:58:37 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 21.2 seconds
RetCode: 0
Status:  OK 
CheckDir: pgUtils.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/pgUtils.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘pgUtils/DESCRIPTION’ ... OK
* this is package ‘pgUtils’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘pgUtils’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createDBTable: no visible global function definition for
  ‘dbBeginTransaction’
deleteDBEntry: no visible global function definition for
  ‘dbBeginTransaction’
insertIntoTable: no visible global function definition for
  ‘dbBeginTransaction’
updateDBTable: no visible global function definition for
  ‘dbBeginTransaction’
* checking Rd files ... NOTE
prepare_Rd: AutoReference.Rd:33-35: Dropping empty section \note
prepare_Rd: AutoReference.Rd:31: Dropping empty section \references
prepare_Rd: AutoReference.Rd:43-45: Dropping empty section \examples
prepare_Rd: auto.fk.name.Rd:14-15: Dropping empty section \details
prepare_Rd: auto.fk.name.Rd:16: Dropping empty section \references
prepare_Rd: auto.fk.name.Rd:19-20: Dropping empty section \seealso
prepare_Rd: auto.fk.name.Rd:22-23: Dropping empty section \examples
prepare_Rd: auto.pk.name.Rd:13-14: Dropping empty section \details
prepare_Rd: auto.pk.name.Rd:15: Dropping empty section \references
prepare_Rd: auto.pk.name.Rd:18-19: Dropping empty section \seealso
prepare_Rd: auto.pk.name.Rd:21-22: Dropping empty section \examples
prepare_Rd: auto.pk.seq.Rd:13-14: Dropping empty section \details
prepare_Rd: auto.pk.seq.Rd:15: Dropping empty section \references
prepare_Rd: auto.pk.seq.Rd:18-19: Dropping empty section \seealso
prepare_Rd: auto.pk.seq.Rd:21-22: Dropping empty section \examples
prepare_Rd: createDBTable.Rd:26: Dropping empty section \references
prepare_Rd: createSequence.Rd:19: Dropping empty section \references
prepare_Rd: dbListSequences.Rd:18: Dropping empty section \references
prepare_Rd: deleteDBEntry.Rd:21: Dropping empty section \references
prepare_Rd: deleteDBEntry.Rd:28-29: Dropping empty section \examples
prepare_Rd: do.log.Rd:13: Dropping empty section \references
prepare_Rd: insertIntoTable.Rd:22: Dropping empty section \references
prepare_Rd: log.file.Rd:13: Dropping empty section \references
prepare_Rd: log.level.Rd:10-11: Dropping empty section \details
prepare_Rd: log.level.Rd:12: Dropping empty section \references
prepare_Rd: loggit.Rd:14-15: Dropping empty section \details
prepare_Rd: loggit.Rd:16: Dropping empty section \references
prepare_Rd: loggit.Rd:19-20: Dropping empty section \seealso
prepare_Rd: loggit.Rd:22-23: Dropping empty section \examples
prepare_Rd: searchIn.Rd:19: Dropping empty section \references
prepare_Rd: searchIn.Rd:23-24: Dropping empty section \examples
prepare_Rd: updateDBTable.Rd:24: Dropping empty section \references
prepare_Rd: updateDBTable.Rd:32-33: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

pgUtils.Rcheck/00install.out:

* installing *source* package ‘pgUtils’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (pgUtils)

pgUtils.Rcheck/pgUtils-Ex.timings:

nameusersystemelapsed
createDBTable000
insertIntoTable000