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Package 362/514HostnameOS / ArchBUILDCHECKBUILD BIN
pcaMethods 1.40.0
Wolfram Stacklies
Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/pcaMethods
Last Changed Rev: 59920 / Revision: 64395
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: pcaMethods
Version: 1.40.0
Command: rm -rf pcaMethods.buildbin-libdir && mkdir pcaMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh pcaMethods_1.40.0.tar.gz /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R pcaMethods.buildbin-libdir
StartedAt: 2012-03-24 05:30:13 -0700 (Sat, 24 Mar 2012)
EndedAt: 2012-03-24 05:31:00 -0700 (Sat, 24 Mar 2012)
EllapsedTime: 47.0 seconds
RetCode: 0
Status:  OK 
PackageFile: pcaMethods_1.40.0.tgz
PackageFileSize: 1024 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=pcaMethods.buildbin-libdir pcaMethods_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package 'pcaMethods' ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c nipals.cpp -o nipals.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pcaMethods.so nipals.o /Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/lib/i386/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'pcaMethods'
Creating a generic function for 'biplot' from package 'stats' in package 'pcaMethods'
Creating a generic function for 'summary' from package 'base' in package 'pcaMethods'
Creating a generic function for 'predict' from package 'stats' in package 'pcaMethods'
Creating a generic function for 'residuals' from package 'stats' in package 'pcaMethods'
Creating a generic function for 'resid' from package 'stats' in package 'pcaMethods'
Creating a generic function for 'fitted' from package 'stats' in package 'pcaMethods'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'missingValues.Rnw' 
   'outliers.Rnw' 
   'pcaMethods.Rnw' 
** testing if installed package can be loaded

* DONE (pcaMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pcaMethods.buildbin-libdir/pcaMethods/libs/i386/pcaMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/i386/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/i386/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/i386/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/i386/pcaMethods.so"


>>>>>>> 
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=pcaMethods.buildbin-libdir --libs-only pcaMethods_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package 'pcaMethods' ...
** libs
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c nipals.cpp -o nipals.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pcaMethods.so nipals.o /Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/lib/ppc/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/ppc

* DONE (pcaMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pcaMethods.buildbin-libdir/pcaMethods/libs/ppc/pcaMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/ppc/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/ppc/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/ppc/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/ppc/pcaMethods.so"


>>>>>>> 
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=pcaMethods.buildbin-libdir --libs-only pcaMethods_1.40.0.tar.gz'
>>>>>>> 

* installing *source* package 'pcaMethods' ...
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/include"   -fPIC  -g -O2 -Wall -fasm-blocks -c nipals.cpp -o nipals.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o pcaMethods.so nipals.o /Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rcpp/lib/x86_64/libRcpp.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/pcaMethods.buildbin-libdir/pcaMethods/libs/x86_64

* DONE (pcaMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR pcaMethods.buildbin-libdir/pcaMethods/libs/x86_64/pcaMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/x86_64/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/x86_64/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/x86_64/pcaMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "pcaMethods.buildbin-libdir/pcaMethods/libs/x86_64/pcaMethods.so"