netresponse 1.5.12
Leo Lahti
| Snapshot Date: 2011-07-16 19:22:50 -0700 (Sat, 16 Jul 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/netresponse | | Last Changed Rev: 56461 / Revision: 56778 | | Last Changed Date: 2011-06-29 11:27:43 -0700 (Wed, 29 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/netresponse.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'netresponse/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'netresponse' version '1.5.12'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'netresponse' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
Note: significantly better compression could be obtained
by using tools::resaveRdaFiles() or R CMD build --resave-data
old_size new_size compress
dna.rda 271Kb 181Kb xz
osmo.rda 577Kb 416Kb xz
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
Running 'ICMg.test.R'
Running 'test.R'
Running 'vdpmixture.R'
Running 'visualization.R'
OK
** running tests for arch 'x64'
Running 'ICMg.test.R'
Running 'test.R'
Running 'vdpmixture.R'
Running 'visualization.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
install for i386
* installing *source* package 'netresponse' ...
** libs
gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O3 -Wall -std=gnu99 -mtune=core2 -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields'
netresponse.c: In function 'mLogLambda':
netresponse.c:655:11: warning: 'Mumu' may be used uninitialized in this function
netresponse.c:655:18: warning: 'S2mu' may be used uninitialized in this function
netresponse.c:655:25: warning: 'Mubar' may be used uninitialized in this function
netresponse.c:655:33: warning: 'Mutilde' may be used uninitialized in this function
netresponse.c:656:6: warning: 'AlphaKsi' may be used uninitialized in this function
netresponse.c:656:17: warning: 'BetaKsi' may be used uninitialized in this function
netresponse.c:656:27: warning: 'KsiAlpha' may be used uninitialized in this function
netresponse.c:656:38: warning: 'KsiBeta' may be used uninitialized in this function
netresponse.c:656:48: warning: 'U_p' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Attaching package: 'graph'
The following object(s) are masked from 'package:igraph':
degree
Loading required package: infotheo
Loading Tcl/Tk interface ... done
Note: no visible global function definition for 'mk.qOFz'
Note: no visible global function definition for 'mk.E.log.q.p.eta.c'
Note: no visible global function definition for 'mk.log.lambda'
Note: no visible global function definition for 'split.qofz.c'
Note: no visible global function definition for 'mk.hp.posterior'
Note: no visible global function definition for 'updatePosterior.c'
Note: no visible global function definition for 'mk.log.lambda'
Note: no visible global function definition for 'mk.E.log.q.p.eta.c'
Note: no visible global function definition for 'mk.free.energy.c'
Note: no visible global function definition for 'mk.hp.posterior'
Note: no visible global function definition for 'mk.free.energy.c'
Note: no visible global function definition for 'mk.qOFz'
Note: no visible global function definition for 'mk.hp.posterior'
Note: no visible global function definition for 'mk.E.log.q.p.eta.c'
Note: no visible global function definition for 'mk.log.lambda'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'netresponse.Rnw'
** testing if installed package can be loaded
netresponse Copyright (C) 2008-2011 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under GNU GPL >=2, see the licensing terms for details.
add DLL for x64
* installing *source* package 'netresponse' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.9-B/R/include" -O2 -Wall -std=gnu99 -mtune=core2 -c netresponse.c -o netresponse.o
netresponse.c: In function 'mHPpost':
netresponse.c:264:15: warning: unused variable 'prior_fields'
netresponse.c: In function 'mLogLambda':
netresponse.c:655:11: warning: 'Mumu' may be used uninitialized in this function
netresponse.c:655:18: warning: 'S2mu' may be used uninitialized in this function
netresponse.c:655:25: warning: 'Mubar' may be used uninitialized in this function
netresponse.c:655:33: warning: 'Mutilde' may be used uninitialized in this function
netresponse.c:656:6: warning: 'AlphaKsi' may be used uninitialized in this function
netresponse.c:656:17: warning: 'BetaKsi' may be used uninitialized in this function
netresponse.c:656:27: warning: 'KsiAlpha' may be used uninitialized in this function
netresponse.c:656:38: warning: 'KsiBeta' may be used uninitialized in this function
netresponse.c:656:48: warning: 'U_p' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o netresponse.dll tmp.def netresponse.o -LD:/biocbld/BBS-2˜1.9-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.9-bioc/meat/netresponse.buildbin-libdir/netresponse/libs/x64
** testing if installed package can be loaded
netresponse Copyright (C) 2008-2011 Leo Lahti.
This program comes with ABSOLUTELY NO WARRANTY.
This is free software, and you are welcome to redistribute it under GNU GPL >=2, see the licensing terms for details.
* MD5 sums
packaged installation of 'netresponse' as netresponse_1.5.12.zip
* DONE (netresponse)