Package: microRNA

Version: 1.12.0

Command: /home/biocbuild/bbs-2.9-bioc/R/bin/R CMD check --no-vignettes --timings microRNA_1.12.0.tar.gz

StartedAt: 2012-03-24 01:31:06 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 01:33:42 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 155.9 seconds

RetCode: 0

Status:  OK

CheckDir: microRNA.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/microRNA.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘microRNA/DESCRIPTION’ ... OK
* this is package ‘microRNA’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘microRNA’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 11.4Mb
  sub-directories of 1Mb or more:
    data      9.3Mb
    extdata   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
                old_size new_size compress
  hsTargets.rda    3.9Mb    2.7Mb       xz
  mmTargets.rda    5.4Mb    2.6Mb       xz
  s3utr.rda         36Kb     30Kb       xz
* checking examples ... OK
* checking PDF version of manual ... OK

* installing *source* package ‘microRNA’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (microRNA)

name	user	system	elapsed
RNA2DNA	0	0	0
get_selfhyb_subseq	0.284	0.004	0.364
hsSeqs	0.004	0.000	0.004
hsTargets	1.212	0.024	1.233
matchSeeds	4.652	0.068	4.876
mmSeqs	0.000	0.000	0.002
mmTargets	3.580	0.048	3.674
s3utr	0.004	0.000	0.004
seedRegions	0.004	0.000	0.004