mcaGUI 1.2.0
Wade K. Copeland
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/mcaGUI | | Last Changed Rev: 59920 / Revision: 64395 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/mcaGUI.Rcheck’
* using R version 2.14.2 (2012-02-29)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mcaGUI/DESCRIPTION’ ... OK
* this is package ‘mcaGUI’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘iplots’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package ‘mcaGUI’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File ‘mcaGUI/R/zzz.R’:
.onLoad calls:
cat("Loading mcaGUI()\n")
print("You can access the mcaGUI vignette by browsing to: ")
print(system.file("doc", "An_Introduction_and_User_Guide_for_mcaGUI.pdf", package = "mcaGUI"))
Package startup functions should use ‘packageStartupMessage’ to
generate messages.
See section ‘Good practice’ in ?.onAttach.
.editDFProperties : <anonymous>: no visible binding for global variable
‘getType’
.newSet : setISetByName: no visible global function definition for
‘iset.list’
.newSet : setISetByName: no visible global function definition for
‘iset.set’
.newSet: no visible global function definition for ‘iset.list’
.newSet: no visible global function definition for ‘iset.set’
.newSet: no visible global function definition for ‘iset.new’
.newSet: no visible global function definition for ‘iset.df’
.newSet : <anonymous>: no visible global function definition for ‘ibox’
.newSet : <anonymous>: no visible global function definition for
‘imosaic’
.newSet : <anonymous>: no visible global function definition for ‘ipcp’
.newSet : <anonymous>: no visible global function definition for
‘iset.selected’
.newSet : <anonymous>: no visible global function definition for
‘iset.select’
.newSet : <anonymous>: no visible global function definition for
‘iplot.cur’
.newSet : <anonymous>: no visible global function definition for
‘iplot.list’
.newSet : <anonymous>: no visible global function definition for
‘iplot.set’
.newSet : <anonymous> : addTrendLine: no visible global function
definition for ‘iset.selected’
.newSet : <anonymous> : addTrendLine: no visible global function
definition for ‘iabline’
.newSet : <anonymous> : addTrendLine: no visible global function
definition for ‘ilines’
.newSet : <anonymous>: no visible global function definition for
‘iobj.rm’
.newSet : <anonymous>: no visible global function definition for
‘iobj.cur’
.newSet : <anonymous>: no visible global function definition for
‘.jstrVal’
.newSet : getCurrentPlotNameType: no visible global function definition
for ‘iplot.list’
.newSet : getCurrentPlotNameType: no visible global function definition
for ‘iplot.cur’
OTUbasereader : OTUbase: no visible binding for '<<-' assignment to
‘OTUset’
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
for global variable ‘Sample_Data’
Proportion_Or_Count_Reader : createAbundanceTable: no visible binding
for global variable ‘collab2’
Proportion_Or_Count_Reader : new.window : createAssignmentData: no
visible binding for '<<-' assignment to ‘collab2’
constructionOfNormal : updatePlot: no visible binding for global
variable ‘x’
histogramAndDensity : addDensity: no visible binding for global
variable ‘x’
lsDatasets: no visible global function definition for ‘.GlobalEnv’
lsFunctions: no visible global function definition for ‘.GlobalEnv’
lsModels: no visible global function definition for ‘.GlobalEnv’
lsTs: no visible global function definition for ‘.GlobalEnv’
mcaGUI: no visible binding for global variable ‘pmg.user.menu’
mcaGUI: no visible binding for global variable ‘pmg.menubar’
mcaGUI: no visible binding for '<<-' assignment to ‘send’
probabilityCalculator : updatePlot: no visible binding for global
variable ‘x’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* installing *source* package ‘mcaGUI’ ...
** R
** inst
** preparing package for lazy loading
Xlib: extension "RANDR" missing on display ":13780.0".
Warning in .simpleDuplicateClass(def, prev) :
A specification for class “.ShortReadBase” in package ‘OTUbase’ seems equivalent to one from package ‘ShortRead’ and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Xlib: extension "RANDR" missing on display ":13780.0".
Loading mcaGUI()
[1] "You can access the mcaGUI vignette by browsing to: "
[1] "/loc/home/biocbuild/bbs-2.9-bioc/meat/mcaGUI.Rcheck/mcaGUI/doc/An_Introduction_and_User_Guide_for_mcaGUI.pdf"
GUI requires an interactive environment
* DONE (mcaGUI)