hexbin 1.27.0
Nicholas Lewin-Koh
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/hexbin | | Last Changed Rev: 54802 / Revision: 56351 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | [ OK ] | OK |
* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/hexbin.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘hexbin/DESCRIPTION’ ... OK
* this is package ‘hexbin’ version ‘1.27.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘hexbin’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for ‘coords’
* checking Rd files ... NOTE
prepare_Rd: NHANES.Rd:41-43: Dropping empty section \references
prepare_Rd: hexList.Rd:46-48: Dropping empty section \examples
prepare_Rd: hexVP.abline.Rd:43-45: Dropping empty section \examples
prepare_Rd: hexViewport.Rd:25-27: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:15-16: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:23-24: Dropping empty section \examples
prepare_Rd: panel.hexloess.Rd:28-29: Dropping empty section \details
prepare_Rd: panel.hexloess.Rd:41-42: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘hdiffplot.R’
Comparing ‘hdiffplot.Rout’ to ‘hdiffplot.Rout.save’ ...9c9
< Buggy version of Kinderman-Ramage generator used
---
> Buggy version of Kinderman-Ramage generator used.
24,25c24,25
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
< ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
> ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
109,110c109,110
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
Running ‘hray.R’
Running ‘large.R’
Running ‘viewp-ex.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package ‘hexbin’ ...
** libs
*** arch - i386
gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -pedantic -c hbin.f -o hbin.o
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gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -pedantic -c hcell.f -o hcell.o
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gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -pedantic -c herode.f -o herode.o
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herode.f:37.26:
integer n, bdim(2) ! number of cells and 2-D array bounds
1
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herode.f:38.24:
integer erode(1) ! erosion status
1
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integer ncell(1),ncnt(1) ! extracted id's and expanded counts
1
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integer sides(1) ! number of exposed sides
1
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integer neib(6,*) ! pointers to the neighbors
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logical exist(0:*) ! cell existence
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integer inc1(6), inc2(6) ! increments to get neighbors
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if (c .eq. 1) then
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gfortran-4.2 -arch i386 -fPIC -g -O2 -Wall -pedantic -c hsm.f -o hsm.o
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gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/hexbin.Rcheck/hexbin/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for "plot" from package "graphics" in package “hexbin”
Creating a generic function for "summary" from package "base" in package “hexbin”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘hexagon_binning.Rnw’
** testing if installed package can be loaded
* DONE (hexbin)