Package: goProfiles

Version: 1.16.0

Command: D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch goProfiles_1.16.0.tar.gz

StartedAt: 2012-01-09 03:25:27 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 03:27:37 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 130.6 seconds

RetCode: 0

Status:  OK

CheckDir: goProfiles.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/goProfiles.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.16.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'goProfiles' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'goProfiles' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'goProfiles.Rnw' 
** testing if installed package can be loaded

* DONE (goProfiles)

name	user	system	elapsed
CD4ids	0.03	0.00	0.03
GOTermsList	0	0	0
basicProfile	4.91	0.12	8.76
compSummary	1.66	0.03	3.36
compareGOProfiles	1.59	0.03	1.63
compareGeneLists	8.12	0.19	9.86
compareProfilesLists	0	0	0
contractedProfile	0.71	0.01	1.14
conversionFunctions	0.03	0.00	0.03
drosophila	0.02	0.00	0.02
equivSummary	0	0	0
equivalentGOProfiles	1.56	0.02	1.57
expandedLevel	1.55	0.01	1.60
expandedProfile	0.30	0.05	0.34
fisherGOProfiles	4.43	0.06	4.50
fitGOProfile	0	0	0
hugoIds	0.02	0.00	0.01
mergeProfilesLists	3.34	0.00	3.35
ngenes	0.69	0.01	0.70
omimIds	0	0	0
plotProfiles	3.44	0.05	3.98
printProfiles	3.11	0.08	3.19
prostateIds	0.01	0.00	0.02