Package: genomes

Version: 2.0.0

Command: rm -rf genomes.buildbin-libdir && mkdir genomes.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=genomes.buildbin-libdir genomes_2.0.0.tar.gz >genomes-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=genomes.buildbin-libdir --install="check:genomes-install.out" --force-multiarch --no-vignettes --timings genomes_2.0.0.tar.gz && mv genomes.buildbin-libdir/* genomes.Rcheck/ && rmdir genomes.buildbin-libdir

StartedAt: 2012-03-24 01:29:55 -0700 (Sat, 24 Mar 2012)

EndedAt: 2012-03-24 01:32:11 -0700 (Sat, 24 Mar 2012)

EllapsedTime: 135.8 seconds

RetCode: 1

Status:  ERROR

CheckDir: genomes.Rcheck

Warnings: NA

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/genomes.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'genomes/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'genomes' version '2.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'genomes' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using R CMD build --resave-data
               old_size new_size compress
  complete.rda     56Kb     41Kb       xz
  leuks.rda        49Kb     40Kb       xz
  lproks.rda      307Kb    233Kb       xz
  pub.rda          66Kb     56Kb       xz
  sra.rda         501Kb    324Kb       xz
  virus.rda        83Kb     63Kb       xz
* checking examples ...
** running examples for arch 'i386' ... ERROR
Running examples in 'genomes-Ex.R' failed
The error most likely occurred in:

> assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ncbiRelease
> ### Title: NCBI revision history
> ### Aliases: ncbiRelease
> ### Keywords: methods
> 
> ### ** Examples
> 
> 
> #Yersinia pestis - 1 chromosome and 3 plasmids
> ncbiRelease("AL590842,AL117189,AL109969,AL117211")
Error in ncbiRelease("AL590842,AL117189,AL109969,AL117211") : 
  No results found
Execution halted

install for i386

* installing *source* package 'genomes' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'genome-tables.Rnw' 
** testing if installed package can be loaded

add DLL for x64

* installing *source* package 'genomes' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'genomes' as genomes_2.0.0.zip

* DONE (genomes)